(Q35998938)

English

Longitudinal population analysis of dual infection with recombination in two strains of HIV type 1 subtype B in an individual from a Phase 3 HIV vaccine efficacy trial

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scholarly article

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Europe PubMed Central

PMC publication ID

11 August 2017

Longitudinal population analysis of dual infection with recombination in two strains of HIV type 1 subtype B in an individual from a Phase 3 HIV vaccine efficacy trial (English)

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

phase III clinical trial

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9

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Europe PubMed Central

PMC publication ID

11 August 2017

10

object named as

Andrew Rambaut

0 references

Keith A. Crandall

object named as

Keith A Crandall

7

0 references

Theodore Oliphant

8

object named as

Theodore Oliphant

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

author name string

David V Jobes

1

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Melissa Daoust

2

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Vivian T Nguyen

3

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Allan Padua

4

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Faruk Sinangil

5

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Marcos Pérez-Losada

6

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Jonathan Fuchs

11

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Phillip W Berman

12

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

publication date

1 October 2006

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

AIDS Research and Human Retroviruses

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

22

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

10

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

968-978

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Population genetics of microbial pathogens estimated from multilocus sequence typing (MLST) data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

HIV superinfection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

Population genetics of Neisseria gonorrhoeae in a high-prevalence community using a hypervariable outer membrane porB and 13 slowly evolving housekeeping genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

Bayes empirical bayes inference of amino acid sites under positive selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

TOPALi: software for automatic identification of recombinant sequences within DNA multiple alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

Dual HIV-1 infection associated with rapid disease progression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

The causes and consequences of HIV evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

MrBayes 3: Bayesian phylogenetic inference under mixed models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

Network analysis of human and simian immunodeficiency virus sequence sets reveals massive recombination resulting in shorter pathways

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

Among 46 near full length HIV type 1 genome sequences from Rakai District, Uganda, subtype D and AD recombinants predominate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

Potential applications and pitfalls of Bayesian inference of phylogeny

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

Forty-one near full-length HIV-1 sequences from Kenya reveal an epidemic of subtype A and A-containing recombinants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

Evaluation of methods for detecting recombination from DNA sequences: empirical data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

Human immunodeficiency virus superinfection and recombination: current state of knowledge and potential clinical consequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

A coalescent-based method for detecting and estimating recombination from gene sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

Evaluation of methods for detecting recombination from DNA sequences: computer simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

High proportion of unrelated HIV-1 intersubtype recombinants in the Mbeya region of southwest Tanzania

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

Maximum-likelihood analysis of molecular adaptation in abalone sperm lysin reveals variable selective pressures among lineages and sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

Identification of diverse HIV type 1 subtypes and dual HIV type 1 infection in pregnant Ugandan women

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

Dual and recombinant infections: an integral part of the HIV-1 epidemic in Brazil

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

Dual transmission of subtype A and D HIV type 1 viruses from a Ugandan woman to her infant.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

MODELTEST: testing the model of DNA substitution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

Identification of single and dual infections with distinct subtypes of human immunodeficiency virus type 1 by using restriction fragment length polymorphism analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

Maximum likelihood estimation of population parameters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

A codon-based model of nucleotide substitution for protein-coding DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

Evidence for coinfection by multiple strains of human immunodeficiency virus type 1 subtype B in an acute seroconvertor.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient. The Transfusion Safety Study Group.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

Recombination in AIDS viruses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

Evolutionary trees from DNA sequences: A maximum likelihood approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

On the number of segregating sites in genetical models without recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

2 October 2017

Phylogenetic profiles: a graphical method for detecting genetic recombinations in homologous sequences.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

11 July 2018

The molecular epidemiology of human immunodeficiency virus type 1 in Edinburgh

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

11 July 2018

Placebo-controlled phase 3 trial of a recombinant glycoprotein 120 vaccine to prevent HIV-1 infection.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

23 September 2018

RDP2: recombination detection and analysis from sequence alignments.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

23 September 2018

HIV-1 co/super-infection in intravenous drug users

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

23 September 2018

Recombination: Multiply infected spleen cells in HIV patients

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

23 September 2018

A simulation study of the reliability of recombination detection methods.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

23 September 2018

Selecting models of nucleotide substitution: an application to human immunodeficiency virus 1 (HIV-1).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

23 September 2018

Dual infection with human immunodeficiency virus type 1 of distinct envelope subtypes in humans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

23 September 2018

Statistical tests for detecting gene conversion.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

23 September 2018

Recombination in HIV-1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

14 November 2018

Protecting HIV databases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1982842

14 November 2018

The power to detect recombination using the coalescent

1 reference

https://pubmed.ncbi.nlm.nih.gov/17067266

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HIV-1 superinfection--a word of caution

1 reference

https://pubmed.ncbi.nlm.nih.gov/17067266

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

https://pubmed.ncbi.nlm.nih.gov/17067266

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dual infection with HIV-1 Thai subtype B and E

1 reference

https://pubmed.ncbi.nlm.nih.gov/17067266

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dual infection with different strains of the same HIV-1 subtype

1 reference

https://pubmed.ncbi.nlm.nih.gov/17067266

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1089/AID.2006.22.968

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

ResearchGate publication ID

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