(Q36001233)

11 August 2017

Text mining for precision medicine: automating disease-mutation relationship extraction from biomedical literature (English)

1 reference

11 August 2017

1 reference

relationship extraction

0 references

3

Zhiyong Lu

1 reference

11 August 2017

Ayush Singhal

1

1 reference

11 August 2017

Michael Simmons

series ordinal

2

1 reference

11 August 2017

language of work or name

1 reference

27 April 2016

1 reference

Journal of the American Medical Informatics Association

11 August 2017

1 reference

11 August 2017

23

1 reference

11 August 2017

4

1 reference

11 August 2017

766-772

1 reference

Extracting research-quality phenotypes from electronic health records to support precision medicine

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926749

Adapting a natural language processing tool to facilitate clinical trial curation for personalized cancer therapy

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926749

A new initiative on precision medicine

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926749

Mutation extraction tools can be combined for robust recognition of genetic variants in the literature

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926749

Hybrid curation of gene-mutation relations combining automated extraction and crowdsourcing

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926749

Attitudes toward molecular testing for personalized cancer therapy

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926749

ClinVar: public archive of relationships among sequence variation and human phenotype

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926749

Personalized medicine: challenges and opportunities for translational bioinformatics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926749

DNorm: disease name normalization with pairwise learning to rank

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926749

PubTator: a web-based text mining tool for assisting biocuration

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926749

tmVar: a text mining approach for extracting sequence variants in biomedical literature

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926749

SNPedia: a wiki supporting personal genome annotation, interpretation and analysis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926749

Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926749

EnzyMiner: automatic identification of protein level mutations and their impact on target enzymes from PubMed abstracts

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926749

McKusick's Online Mendelian Inheritance in Man (OMIM)

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926749

The Cancer Biomedical Informatics Grid (caBIG): infrastructure and applications for a worldwide research community.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926749

MutationFinder: a high-performance system for extracting point mutation mentions from text

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926749

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926749

Time for a unified system of mutation description and reporting: a review of locus-specific mutation databases

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926749

Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926749

Application of automatic mutation-gene pair extraction to diseases

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926749

OSIRIS: a tool for retrieving literature about sequence variants.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926749

Novel tools for extraction and validation of disease-related mutations applied to Fabry disease

23 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27121612

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/JAMIA/OCW041

1 reference

journals/jamia/SinghalSL16

11 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

11 August 2017

PubMed publication ID

27121612

1 reference