(Q36103096)

12 August 2017

Requirement for transient metal ions revealed through computational analysis for DNA polymerase going in reverse (English)

1 reference

12 August 2017

computational biology

1 reference

1

Lalith Perera

1 reference

12 August 2017

Bret D Freudenthal

2

1 reference

12 August 2017

William A Beard

3

1 reference

12 August 2017

David D Shock

4

1 reference

12 August 2017

Lee G Pedersen

5

1 reference

12 August 2017

Samuel H Wilson

6

1 reference

12 August 2017

language of work or name

English

0 references

publication date

8 September 2015

1 reference

Proceedings of the National Academy of Sciences of the United States of America

12 August 2017

1 reference

12 August 2017

112

1 reference

12 August 2017

38

1 reference

12 August 2017

E5228-36

1 reference

describes a project that uses

12 August 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC4586863/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

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2 October 2017

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Viewing Human DNA Polymerase β Faithfully and Unfaithfully Bypass an Oxidative Lesion by Time-Dependent Crystallography

2 October 2017

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Uncovering the polymerase-induced cytotoxicity of an oxidized nucleotide

2 October 2017

1 reference

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Structure and mechanism of DNA polymerase β

2 October 2017

1 reference

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Structural comparison of DNA polymerase architecture suggests a nucleotide gateway to the polymerase active site

2 October 2017

1 reference

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Observing a DNA Polymerase Choose Right from Wrong

2 October 2017

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Amino Acid Substitution in the Active Site of DNA Polymerase β Explains the Energy Barrier of the Nucleotidyl Transfer Reaction

2 October 2017

1 reference

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Biological and therapeutic relevance of nonreplicative DNA polymerases to cancer

2 October 2017

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Watching DNA polymerase η make a phosphodiester bond

2 October 2017

1 reference

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A new proofreading mechanism for lesion bypass by DNA polymerase-λ.

2 October 2017

1 reference

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Human mitochondrial RNA polymerase: evaluation of the single-nucleotide-addition cycle on synthetic RNA/DNA scaffolds

2 October 2017

1 reference

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Modifications to the dNTP triphosphate moiety: from mechanistic probes for DNA polymerases to antiviral and anti-cancer drug design

2 October 2017

1 reference

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Nucleoside analogs: molecular mechanisms signaling cell death.

2 October 2017

1 reference

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Incorrect nucleotide insertion at the active site of a G:A mismatch catalyzed by DNA polymerase beta

2 October 2017

1 reference

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A novel mechanism of selectivity against AZT by the human mitochondrial DNA polymerase

2 October 2017

1 reference

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2 October 2017

QM/MM studies of enzymes

1 reference

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Energy analysis of chemistry for correct insertion by DNA polymerase beta

2 October 2017

1 reference

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Small revisions to predicted distances around metal sites in proteins

2 October 2017

1 reference

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Magnesium-induced assembly of a complete DNA polymerase catalytic complex.

2 October 2017

1 reference

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Functions of DNA polymerases

2 October 2017

1 reference

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Poliovirus RNA-dependent RNA polymerase (3Dpol): pre-steady-state kinetic analysis of ribonucleotide incorporation in the presence of Mg2+.

2 October 2017

1 reference

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Efficient pyrophosphorolysis by a hepatitis B virus polymerase may be a primer-unblocking mechanism

2 October 2017

1 reference

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DNA structure and aspartate 276 influence nucleotide binding to human DNA polymerase beta. Implication for the identity of the rate-limiting conformational change

2 October 2017

1 reference

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Unblocking of chain-terminated primer by HIV-1 reverse transcriptase through a nucleotide-dependent mechanism

2 October 2017

1 reference

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Crystal structures of human DNA polymerase beta complexed with gapped and nicked DNA: evidence for an induced fit mechanism

2 October 2017

1 reference

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Structural basis for the 3'-5' exonuclease activity of Escherichia coli DNA polymerase I: a two metal ion mechanism

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4586863

Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4586863

Theoretical studies of enzymic reactions: dielectric, electrostatic and steric stabilization of the carbonium ion in the reaction of lysozyme

2 October 2017

1 reference

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Purification and domain-mapping of mammalian DNA polymerase beta.

2 October 2017

1 reference

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Kinetic mechanism of the DNA-dependent DNA polymerase activity of human immunodeficiency virus reverse transcriptase

2 July 2018

1 reference

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Kinetic mechanism of DNA polymerase I(Klenow fragment): identification of a second conformational change and evaluation of the internal equilibrium constant

2 July 2018

1 reference

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Combining Quantum Mechanics Methods with Molecular Mechanics Methods in ONIOM.

2 July 2018

1 reference

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Charge Model 5: An Extension of Hirshfeld Population Analysis for the Accurate Description of Molecular Interactions in Gaseous and Condensed Phases

23 September 2018

1 reference

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Applications of quantum mechanical/molecular mechanical methods to the chemical insertion step of DNA and RNA polymerization

23 September 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1511207112

Atomic charges derived from electrostatic potentials: A detailed study

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1511207112

Determining atom-centered monopoles from molecular electrostatic potentials. The need for high sampling density in formamide conformational analysis

21 January 2018

1 reference

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Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1511207112

Enzymatic synthesis of deoxyribonucleic acid. 28. The pyrophosphate exchange and pyrophosphorolysis reactions of deoxyribonucleic acid polymerase

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26351676

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1511207112

1 reference

12 August 2017

0 references

1 reference

12 August 2017

1 reference