(Q36160571)

English

A mass spectrometry-based method for comprehensive quantitative determination of post-transcriptional RNA modifications: the complete chemical structure of Schizosaccharomyces pombe ribosomal RNAs

scientific article

In more languages

default values for all languages

No label defined

No description defined

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

A mass spectrometry-based method for comprehensive quantitative determination of post-transcriptional RNA modifications: the complete chemical structure of Schizosaccharomyces pombe ribosomal RNAs (English)

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

post-transcriptional modification

0 references

Schizosaccharomyces pombe

object named as

Schizosaccharomyces pombe

1 reference

based on heuristic

inferred from title

1

object named as

Masato Taoka

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

author name string

Yuko Nobe

2

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

Masayuki Hori

3

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

Aiko Takeuchi

4

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

Shunpei Masaki

5

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

Yoshio Yamauchi

6

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

Hiroshi Nakayama

7

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

Nobuhiro Takahashi

8

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

Toshiaki Isobe

9

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

language of work or name

0 references

publication date

26 May 2015

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

Nucleic Acids Research

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

43

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

18

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

e115

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

copyright license

Creative Commons Attribution 4.0 International

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Profiling of ribose methylations in RNA by high-throughput sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 October 2017

RNA cytidine acetyltransferase of small-subunit ribosomal RNA: identification of acetylation sites and the responsible acetyltransferase in fission yeast, Schizosaccharomyces pombe

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 October 2017

Transcriptome-wide mapping of pseudouridines: pseudouridine synthases modify specific mRNAs in S. cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 October 2017

Transcriptome-wide mapping reveals widespread dynamic-regulated pseudouridylation of ncRNA and mRNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 October 2017

Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 October 2017

Quantitative analysis of rRNA modifications using stable isotope labeling and mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 October 2017

Adenosine-to-inosine RNA editing and human disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 October 2017

MODOMICS: a database of RNA modification pathways--2013 update

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 October 2017

Concurrent CIC mutations, IDH mutations, and 1p/19q loss distinguish oligodendrogliomas from other cancers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 October 2017

Human mitochondrial diseases caused by lack of taurine modification in mitochondrial tRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 October 2017

U2 snRNA is inducibly pseudouridylated at novel sites by Pus7p and snR81 RNP.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 October 2017

COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 October 2017

In-gel digestion for mass spectrometric characterization of RNA from fluorescently stained polyacrylamide gels.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 October 2017

Loss of function of the tumor suppressor DKC1 perturbs p27 translation control and contributes to pituitary tumorigenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 October 2017

tRNA stabilization by modified nucleotides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 October 2017

Discovery and characterization of tRNAIle lysidine synthetase (TilS).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 October 2017

Implication of snoRNA U50 in human breast cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 October 2017

Ariadne: a database search engine for identification and chemical analysis of RNA using tandem mass spectrometry data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 October 2017

Identification of recognition residues for ligation-based detection and quantitation of pseudouridine and N6-methyladenosine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 October 2017

tRNA's wobble decoding of the genome: 40 years of modification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 October 2017

A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 October 2017

Detection of pseudouridine and other modifications in tRNA by cyanoethylation and MALDI mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 October 2017

rRNA modifications and ribosome function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 October 2017

Analysis of nucleic acids by on-line liquid chromatography-mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 October 2017

Applications of mass spectrometry to the characterization of oligonucleotides and nucleic acids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 October 2017

A novel method for the determination of post-transcriptional modification in RNA by mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 October 2017

Sequence homologies in mammalian 5.8S ribosomal RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 October 2017

An analytical platform for mass spectrometry-based identification and chemical analysis of RNA in ribonucleoprotein complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 July 2018

RNA cytosine methylation analysis by bisulfite sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 July 2018

Post-transcriptional modification mapping in the Clostridium acetobutylicum 16S rRNA by mass spectrometry and reverse transcriptase assays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 July 2018

New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

2 July 2018

Transcriptome-wide mapping of N(6)-methyladenosine by m(6)A-seq based on immunocapturing and massively parallel sequencing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

23 September 2018

Characterization and quantification of RNA post-transcriptional modifications using stable isotope labeling of RNA in conjunction with mass spectrometry analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

23 September 2018

Biochemical identification of A-to-I RNA editing sites by the inosine chemical erasing (ICE) method.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

23 September 2018

Parallel isotope-based quantification of modified tRNA nucleosides.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

23 September 2018

Sequence-specific cleavage of RNA by a hybrid ribonuclease H.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605285

23 September 2018

Mass spectrometry of nucleic acids

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV560

21 January 2018

Denaturing reversed phase liquid chromatographic separation of non-coding ribonucleic acids on macro-porous polystyrene-divinylbenzene resins

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV560

21 January 2018

Analysis of modified nucleosides and nucleotide sequence of tRNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/26013808

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

N4-Acetylcytidine. A previously unidentified labile component of the small subunit of eukaryotic ribosomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/26013808

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKV560

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

release_ekqc5q2e2vdkhcb35p4as6pgfe

1 reference

https://api.fatcat.wiki/v0/release/ekqc5q2e2vdkhcb35p4as6pgfe

24 November 2022

based on heuristic

mapped directly with Wikidata item

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q36160571&oldid=1856911145"