(Q36216244)

12 August 2017

Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut (English)

1 reference

12 August 2017

17

1 reference

12 August 2017

Marta Mangifesta

7

0 references

Douwe van Sinderen

Douwe van Sinderen

19

0 references

Matthias Scholz

Matthias Scholz

10

0 references

Christian Milani

Christian Milani

1

0 references

Francesca Turroni

Francesca Turroni

4

0 references

Sabrina Duranti

Sabrina Duranti

3

0 references

Gabriele Andrea Lugli

Gabriele Andrea Lugli

2

0 references

Borja Sanchez

Borja Sanchez

12

0 references

Abelardo Margolles

Abelardo Margolles

18

0 references

Arancha Hevia

8

Arancha Hevia

1 reference

12 August 2017

9

Alice Viappiani

1 reference

12 August 2017

5

Leonardo Mancabelli

1 reference

12 August 2017

Chiara Ferrario

6

1 reference

12 August 2017

Stefania Arioli

11

1 reference

12 August 2017

Jonathan Lane

13

1 reference

12 August 2017

Doyle V Ward

14

1 reference

12 August 2017

Rita Hickey

15

1 reference

12 August 2017

Diego Mora

16

1 reference

12 August 2017

Marco Ventura

20

1 reference

12 August 2017

language of work or name

English

0 references

publication date

28 October 2015

1 reference

12 August 2017

1 reference

12 August 2017

5

1 reference

12 August 2017

15782

1 reference

Creative Commons Attribution 4.0 International

12 August 2017

start time

28 October 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

DESeq2

DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1038/srep15782

0 references

cites work

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

Cross-feeding by Bifidobacterium breve UCC2003 during co-cultivation with Bifidobacterium bifidum PRL2010 in a mucin-based medium

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

Insights into glycogen metabolism in Lactobacillus acidophilus: impact on carbohydrate metabolism, stress tolerance and gut retention

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

Phylogenomics resolves the timing and pattern of insect evolution

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

Investigation of the evolutionary development of the genus Bifidobacterium by comparative genomics

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

Genomic encyclopedia of type strains of the genus Bifidobacterium

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

Saccharide breakdown and fermentation by the honey bee gut microbiome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

eggNOG v4.0: nested orthology inference across 3686 organisms

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

The carbohydrate-active enzymes database (CAZy) in 2013

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

Assessing the fecal microbiota: an optimized ion torrent 16S rRNA gene-based analysis protocol

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

Human milk and related oligosaccharides as prebiotics

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

Host-microbe interactions that facilitate gut colonization by commensal bifidobacteria

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

Structure, function and diversity of the healthy human microbiome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

Metagenomic microbial community profiling using unique clade-specific marker genes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

Diversity of bifidobacteria within the infant gut microbiota

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

Bifidobacterial enzymes involved in the metabolism of human milk oligosaccharides

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

How glycan metabolism shapes the human gut microbiota

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

Fast gapped-read alignment with Bowtie 2

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

Method for milk oligosaccharide profiling by 2-aminobenzamide labeling and hydrophilic interaction chromatography

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

Carbohydrate metabolism in Bifidobacteria

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

BEDTools: a flexible suite of utilities for comparing genomic features

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

The Sequence Alignment/Map format and SAMtools

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

Fast and accurate short read alignment with Burrows-Wheeler transform

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

Exploring the diversity of the bifidobacterial population in the human intestinal tract

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

Genome-scale analyses of health-promoting bacteria: probiogenomics

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

Glycogen and maltose utilization by Escherichia coli O157:H7 in the mouse intestine

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

Genomic and metabolic studies of the impact of probiotics on a model gut symbiont and host

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

Genomics as a means to understand bacterial phylogeny and ecological adaptation: the case of bifidobacteria.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

Metagenomic analysis of the human distal gut microbiome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

The abundance and variety of carbohydrate-active enzymes in the human gut microbiota

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

An exo-alpha-sialidase from bifidobacteria involved in the degradation of sialyloligosaccharides in human milk and intestinal glycoconjugates

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623478

Glycogen metabolism loss: a common marker of parasitic behaviour in bacteria?

22 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26506949

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Glycogen with short average chain length enhances bacterial durability

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26506949

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/SREP15782

1 reference

release_4uo63talcjbtpb7srtktcwgudy

12 August 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/4uo63talcjbtpb7srtktcwgudy

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

12 August 2017

1 reference