(Q36264560)

13 August 2017

How best to identify chromosomal interactions: a comparison of approaches (English)

1 reference

13 August 2017

1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28139673%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

A Marieke Oudelaar

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28139673%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Douglas Higgs

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28139673%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Jim R Hughes

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28139673%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

author name string

James O J Davies

1

1 reference

13 August 2017

1 January 2017

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13 August 2017

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28139673%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

volume

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28139673%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

issue

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28139673%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

page(s)

125-134

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28139673%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1038/nmeth.4146

11 June 2020

exact match

0 references

cites work

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Global mapping of protein-DNA interactions in vivo by digital genomic footprinting

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

The long-range interaction landscape of gene promoters

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Functional and mechanistic diversity of distal transcription enhancers

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Topological domains in mammalian genomes identified by analysis of chromatin interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Spatial partitioning of the regulatory landscape of the X-inactivation centre

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Looping and interaction between hypersensitive sites in the active beta-globin locus

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Gene loops enhance transcriptional directionality

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Detection of DNA looping due to simultaneous interaction of a DNA-binding protein with two spatially separated binding sites on DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Capturing chromosome conformation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Condensin- and Replication-Mediated Bacterial Chromosome Folding and Origin Condensation Revealed by Hi-C and Super-resolution Imaging.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Three-dimensional folding and functional organization principles of the Drosophila genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

3D trajectories adopted by coding and regulatory DNA elements: first-passage times for genomic interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Single-cell Hi-C reveals cell-to-cell variability in chromosome structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Disclosure of a structural milieu for the proximity ligation reveals the elusive nature of an active chromatin hub.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Comparison of Hi-C results using in-solution versus in-nucleus ligation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Long-range interactions between three transcriptional enhancers, active Vkappa gene promoters, and a 3' boundary sequence spanning 46 kilobases

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Chromosome looping at the human alpha-globin locus is mediated via the major upstream regulatory element (HS -40).

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Long-range chromosomal interactions regulate the timing of the transition between poised and active gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Active chromatin hub of the mouse alpha-globin locus forms in a transcription factory of clustered housekeeping genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

DNA flexibility studied by covalent closure of short fragments into circles

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Multiplexed chromosome conformation capture sequencing for rapid genome-scale high-resolution detection of long-range chromatin interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

An evaluation of 3C-based methods to capture DNA interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

UMI-4C for quantitative and targeted chromosomal contact profiling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

A switch between topological domains underlies HoxD genes collinearity in mouse limbs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

The pluripotent genome in three dimensions is shaped around pluripotency factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Pancreatic islet enhancer clusters enriched in type 2 diabetes risk-associated variants

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

High-resolution identification of balanced and complex chromosomal rearrangements by 4C technology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

A single oncogenic enhancer rearrangement causes concomitant EVI1 and GATA2 deregulation in leukemia

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Iterative correction of Hi-C data reveals hallmarks of chromosome organization

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

HiCNorm: removing biases in Hi-C data via Poisson regression

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Organization of the mitotic chromosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Spatial organization of the mouse genome and its role in recurrent chromosomal translocations

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Micro-C XL: assaying chromosome conformation from the nucleosome to the entire genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Targeted Chromatin Capture (T2C): a novel high resolution high throughput method to detect genomic interactions and regulatory elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

An oestrogen-receptor-α-bound human chromatin interactome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Interactome maps of mouse gene regulatory domains reveal basic principles of transcriptional regulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

HiChIP: efficient and sensitive analysis of protein-directed genome architecture

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Predicting the three-dimensional folding of cis-regulatory regions in mammalian genomes using bioinformatic data and polymer models

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Robust 4C-seq data analysis to screen for regulatory DNA interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Architectural protein subclasses shape 3D organization of genomes during lineage commitment

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

FourCSeq: analysis of 4C sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

CTCF Binding Polarity Determines Chromatin Looping.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

HiFive: a tool suite for easy and efficient HiC and 5C data analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

HiC-Pro: an optimized and flexible pipeline for Hi-C data processing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4146

A high-resolution map of the three-dimensional chromatin interactome in human cells

21 January 2018

1 reference

12 December 2020

Connecting the regulatory genome

1 reference

12 December 2020

HiCUP: pipeline for mapping and processing Hi-C data

1 reference

12 December 2020

Long-range intrachromosomal interactions in the T helper type 2 cytokine locus

1 reference

12 December 2020

Multiplexed analysis of chromosome conformation at vastly improved sensitivity

1 reference

12 December 2020