(Q36334334)

13 August 2017

Contribution of Epidemiological Predictors in Unraveling the Phylogeographic History of HIV-1 Subtype C in Brazil (English)

1 reference

13 August 2017

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0 references

1 reference

2

Bram Vrancken

0 references

Philippe Lemey

6

Philippe Lemey

0 references

Marc A. Suchard

5

Marc A Suchard

1 reference

Dennis Maletich Junqueira

13 August 2017

3

Dennis Maletich Junqueira

1 reference

Sabrina Esteves de Matos Almeida

13 August 2017

7

Sabrina Esteves de Matos Almeida

1 reference

Rúbia Marília de Medeiros

13 August 2017

4

Rúbia Marília de Medeiros

1 reference

13 August 2017

1

Tiago Gräf

1 reference

13 August 2017

Aguinaldo Roberto Pinto

8

Aguinaldo Roberto Pinto

1 reference

13 August 2017

language of work or name

English

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publication date

30 September 2015

1 reference

13 August 2017

1 reference

13 August 2017

89

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13 August 2017

24

1 reference

13 August 2017

12341-12348

1 reference

describes a project that uses

13 August 2017

RStudio

1 reference

18 June 2022

https://europepmc.org/article/PMC/4665240

based on heuristic

inferred from PubMed Central ID database lookup

cites work

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30 September 2017

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30 September 2017

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30 September 2017

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Tracing the origin and northward dissemination dynamics of HIV-1 subtype C in Brazil

30 September 2017

1 reference

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Temporal dynamics of HIV-1 circulating subtypes in distinct exposure categories in southern Brazil

30 September 2017

1 reference

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30 September 2017

1 reference

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The increasing prevalence of HIV-1 subtype C in Southern Brazil and its dispersion through the continent

30 September 2017

1 reference

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Phylogeographic analysis of HIV-1 subtype C dissemination in Southern Brazil

30 September 2017

1 reference

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30 September 2017

1 reference

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30 September 2017

1 reference

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30 September 2017

1 reference

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SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics

30 September 2017

1 reference

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HIV type 1 molecular epidemiology in pol and gp41 genes among naive patients from Mato Grosso do Sul State, central western Brazil

30 September 2017

1 reference

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High-resolution phylogenetics and phylogeography of human immunodeficiency virus type 1 subtype C epidemic in South America

30 September 2017

1 reference

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Moderate prevalence of transmitted drug resistance and interiorization of HIV type 1 subtype C in the inland North State of Tocantins, Brazil

30 September 2017

1 reference

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Molecular epidemiology of HIV-1 clades in Southern Brazil

30 September 2017

1 reference

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Tracking a century of global expansion and evolution of HIV to drive understanding and to combat disease

30 September 2017

1 reference

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A Bayesian phylogenetic method to estimate unknown sequence ages

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665240

Phylogeography takes a relaxed random walk in continuous space and time

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665240

HIV-1 primary and secondary antiretroviral drug resistance and genetic diversity among pregnant women from central Brazil

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665240

BLAST+: architecture and applications

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665240

An evolutionary model-based algorithm for accurate phylogenetic breakpoint mapping and subtype prediction in HIV-1

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665240

Bayesian phylogeography finds its roots

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665240

Brazilian Network for HIV Drug Resistance Surveillance: a survey of individuals recently diagnosed with HIV.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665240

Learning to count: robust estimates for labeled distances between molecular sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665240

The genomic and epidemiological dynamics of human influenza A virus

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665240

Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665240

Relaxed phylogenetics and dating with confidence

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665240

An automated genotyping system for analysis of HIV-1 and other microbial sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665240

The causes and consequences of HIV evolution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665240

The epidemiology and iatrogenic transmission of hepatitis C virus in Egypt: a Bayesian coalescent approach

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665240

Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665240

Exploring the demographic history of DNA sequences using the generalized skyline plot

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665240

An integrated framework for the inference of viral population history from reconstructed genealogies.

30 September 2017

1 reference

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Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665240

Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665240

A computer program designed to screen rapidly for HIV type 1 intersubtype recombinant sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665240

Efficient Bayesian inference under the structured coalescent

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665240

Genetic characterization of HIV-1 BC recombinants and evolutionary history of the CRF31_BC in Southern Brazil.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665240

Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertainty

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665240

Heterosexual transmission of human immunodeficiency virus type 1 subtype C in southern Brazil.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665240

Moderate prevalence of transmitted drug resistance and high HIV-1 genetic diversity in patients from Mato Grosso State, Central Western Brazil.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665240

Southern Brazil HIV type 1 C expansion into the state of São Paulo, Brazil.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665240

Is HIV-1 evolving to a less virulent form in humans?

22 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26423943

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

HIV-1 genetic diversity and drug resistance among treatment naïve patients from Southern Brazil: An association of HIV-1 subtypes with exposure categories

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26423943

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/JVI.01681-15

1 reference

13 August 2017

1 reference

13 August 2017

1 reference