(Q36399003)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28604659%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

title

Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28604659%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28604659%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

Hannes L. Röst

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28604659%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

Yansheng Liu

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28604659%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

Alfonso Buil

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28604659%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

Alfonso Buil

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28604659%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

Ben C Collins

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28604659%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

Lars Malmström

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28604659%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

13

Ruedi Aebersold

1 reference

22 March 2020

9

Tim D Spector

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28604659%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

author name string

Christina Ludwig

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28604659%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

Ariel Bensimon

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28604659%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

Martin Soste

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28604659%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

Emmanouil T Dermitzakis

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28604659%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

publication date

12 June 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28604659%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28604659%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

volume

35

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28604659%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

issue

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28604659%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

page(s)

781-788

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28604659%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

22 March 2020

1 reference

10 June 2022

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=5593115

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28 June 2018

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28 June 2018

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Reduced-representation Phosphosignatures Measured by Quantitative Targeted MS Capture Cellular States and Enable Large-scale Comparison of Drug-induced Phenotypes

28 June 2018

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Opening a SWATH Window on Posttranslational Modifications: Automated Pursuit of Modified Peptides

28 June 2018

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Quantitative Profiling of Post-translational Modifications by Immunoaffinity Enrichment and LC-MS/MS in Cancer Serum without Immunodepletion

28 June 2018

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28 June 2018

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28 June 2018

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28 June 2018

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Peptide-Centric Proteome Analysis: An Alternative Strategy for the Analysis of Tandem Mass Spectrometry Data

28 June 2018

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State of the Human Proteome in 2014/2015 As Viewed through PeptideAtlas: Enhancing Accuracy and Coverage through the AtlasProphet

28 June 2018

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Quantification of SAHA-Dependent Changes in Histone Modifications Using Data-Independent Acquisition Mass Spectrometry

28 June 2018

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Data-independent-acquisition mass spectrometry for identification of targeted-peptide site-specific modifications

28 June 2018

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Building high-quality assay libraries for targeted analysis of SWATH MS data

28 June 2018

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Quantitative variability of 342 plasma proteins in a human twin population

28 June 2018

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Sequential Window Acquisition of all Theoretical Mass Spectra (SWATH) Analysis for Characterization and Quantification of Histone Post-translational Modifications

28 June 2018

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Proteomics. Tissue-based map of the human proteome

28 June 2018

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28 June 2018

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5 December 2018

https://pubmed.ncbi.nlm.nih.gov/28604659

12 December 2020

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DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics

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Mass spectrometry-based detection and assignment of protein posttranslational modifications

28 June 2018

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LuciPHOr2: site localization of generic post-translational modifications from tandem mass spectrometry data.

28 June 2018

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28 June 2018

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28 June 2018

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Variation and quantification among a target set of phosphopeptides in human plasma by multiple reaction monitoring and SWATH-MS2 data-independent acquisition

28 June 2018

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28 June 2018

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An abundant dysfunctional apolipoprotein A1 in human atheroma

28 June 2018

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Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach

28 June 2018

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Multiplexed and data-independent tandem mass spectrometry for global proteome profiling.

28 June 2018

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Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system

28 June 2018

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LuciPHOr: algorithm for phosphorylation site localization with false localization rate estimation using modified target-decoy approach

28 June 2018

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Myeloperoxidase, paraoxonase-1, and HDL form a functional ternary complex

28 June 2018

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Multiplexed MS/MS for improved data-independent acquisition

28 June 2018

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28 June 2018

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Robust phosphoproteome enrichment using monodisperse microsphere-based immobilized titanium (IV) ion affinity chromatography

28 June 2018

1 reference

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Regulation of yeast central metabolism by enzyme phosphorylation

28 June 2018

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Comet: an open-source MS/MS sequence database search tool

28 June 2018

1 reference

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A cross-platform toolkit for mass spectrometry and proteomics

28 June 2018

1 reference

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Parallel reaction monitoring for high resolution and high mass accuracy quantitative, targeted proteomics

28 June 2018

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Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics

28 June 2018

1 reference

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Selected reaction monitoring-based proteomics: workflows, potential, pitfalls and future directions

28 June 2018

1 reference

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Using iRT, a normalized retention time for more targeted measurement of peptides

28 June 2018

1 reference

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Modification site localization scoring: strategies and performance

28 June 2018

1 reference

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Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

28 June 2018

1 reference

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28 June 2018

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iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates

28 June 2018

1 reference

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28 June 2018

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28 June 2018

Too many roads not taken

1 reference

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Options and considerations when selecting a quantitative proteomics strategy

28 June 2018

1 reference

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Mass spectrometric analysis of asparagine deamidation and aspartate isomerization in polypeptides

28 June 2018

1 reference

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A guided tour of the Trans-Proteomic Pipeline

28 June 2018

1 reference

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Protein tyrosine nitration: selectivity, physicochemical and biological consequences, denitration, and proteomics methods for the identification of tyrosine-nitrated proteins.

28 June 2018

1 reference

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Phosphoproteomic analysis of distinct tumor cell lines in response to nocodazole treatment

28 June 2018

1 reference

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Building consensus spectral libraries for peptide identification in proteomics

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5593115

Statistical validation of peptide identifications in large-scale proteomics using the target-decoy database search strategy and flexible mixture modeling

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5593115

Chemistry. Mass spectrometry: bottom-up or top-down?

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5593115

Evaluation of multiprotein immunoaffinity subtraction for plasma proteomics and candidate biomarker discovery using mass spectrometry.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5593115

Statistical significance for genomewide studies

28 June 2018

1 reference

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Mass spectrometry-based proteomics

28 June 2018

1 reference

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Characterization of specifically oxidized apolipoproteins in mildly oxidized high density lipoprotein

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5593115

The human plasma proteome: history, character, and diagnostic prospects

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5593115

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5593115

Multipoint quantitative-trait linkage analysis in general pedigrees

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5593115

Crystal structure of truncated human apolipoprotein A-I suggests a lipid-bound conformation

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5593115

Group-DIA: analyzing multiple data-independent acquisition mass spectrometry data files

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5593115

A sentinel protein assay for simultaneously quantifying cellular processes

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5593115

OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5593115

Quantitative measurements of N-linked glycoproteins in human plasma by SWATH-MS.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5593115

Semisupervised model-based validation of peptide identifications in mass spectrometry-based proteomics.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5593115

A clean, more efficient method for in-solution digestion of protein mixtures without detergent or urea.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5593115

neXtProt: a knowledge platform for human proteins

21 September 2018

1 reference

Finding the right antibody for the job

21 January 2018

1 reference

7 January 2021

DIA mass spectrometry

1 reference

7 January 2021

Quantitative proteomic analysis by accurate mass retention time pairs

1 reference

7 January 2021

Identifiers

DOI

10.1038/NBT.3908

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28604659%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28604659%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

PubMed publication ID

28604659

1 reference