(Q36742541)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15836183%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

title

Statistical thermodynamics for chain molecules with simple RNA tertiary contacts (English)

1 reference

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10 January 2020

0 references

0 references

2

1 reference

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10 January 2020

author name string

Zoia Kopeikin

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15836183%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

language of work or name

English

0 references

publication date

1 March 2005

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15836183%20AND%20SRC:MED&resulttype=core&format=json

Journal of Chemical Physics

10 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15836183%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

volume

122

1 reference

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10 January 2020

issue

9

1 reference

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10 January 2020

page(s)

094909

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15836183%20AND%20SRC:MED&resulttype=core&format=json

Early events in RNA folding

10 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442758

Modeling RNA folding paths with pseudoknots: application to hepatitis delta virus ribozyme

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442758

RNA folding energy landscapes.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442758

Quantifying the energetic interplay of RNA tertiary and secondary structure interactions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442758

An optimal Mg(2+) concentration for kinetic folding of the tetrahymena ribozyme

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442758

A dynamic programming algorithm for RNA structure prediction including pseudoknots

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442758

Determination of RNA structure and thermodynamics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442758

Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442758

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442758

Fast algorithm for predicting the secondary structure of single-stranded RNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442758

Improved predictions of secondary structures for RNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442758

On finding all suboptimal foldings of an RNA molecule

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442758

29 September 2017

RNA structure prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442758

Improved free-energy parameters for predictions of RNA duplex stability

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442758

The equilibrium partition function and base pair binding probabilities for RNA secondary structure

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442758

Prediction of RNA secondary structure, including pseudoknotting, by computer simulation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442758

Structural and functional aspects of RNA pseudoknots

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442758

Role of counterion condensation in folding of the Tetrahymena ribozyme. II. Counterion-dependence of folding kinetics

29 September 2017

1 reference

The computer simulation of RNA folding pathways using a genetic algorithm.

21 January 2018

1 reference

Equilibrium unfolding pathway of an H-type RNA pseudoknot which promotes programmed -1 ribosomal frameshifting

21 January 2018

1 reference

An approximation of loop free energy values of RNA H-pseudoknots

21 January 2018

1 reference

21 January 2018

1 reference

RNA secondary structures and their prediction

21 January 2018

1 reference

The Fastest Global Events in RNA Folding: Electrostatic Relaxation and Tertiary Collapse of the Tetrahymena Ribozyme

21 January 2018

1 reference

Role of counterion condensation in folding of the Tetrahymena ribozyme. I. Equilibrium stabilization by cations

21 January 2018

1 reference

A thermodynamic framework and cooperativity in the tertiary folding of a Mg2+-dependent ribozyme

21 January 2018

1 reference

12 December 2020

Non-nearest neighbor effects on the thermodynamics of unfolding of a model mRNA pseudoknot

1 reference

12 December 2020

Folding of an mRNA pseudoknot required for stop codon readthrough: effects of mono- and divalent ions on stability

1 reference

12 December 2020

Predicting thermodynamic properties of RNA

1 reference

12 December 2020

Identifiers

DOI

10.1063/1.1857831

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15836183%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15836183%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

PubMed publication ID

15836183

1 reference