(Q36943702)

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Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation

scientific article published on 19 January 2016

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scholarly article

1 reference

Europe PubMed Central

17 August 2017

Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation (English)

1 reference

Europe PubMed Central

17 August 2017

0 references

metabolomic profile

1 reference

based on heuristic

inferred from title

Cecilia Noecker

object named as

Cecilia Noecker

1

0 references

Janet K Jansson

object named as

Janet K Jansson

6

0 references

Elhanan Borenstein

8

object named as

Elhanan Borenstein

1 reference

Europe PubMed Central

17 August 2017

David N Fredricks

7

object named as

David N Fredricks

1 reference

Europe PubMed Central

17 August 2017

author name string

Alexander Eng

2

1 reference

Europe PubMed Central

17 August 2017

Sujatha Srinivasan

3

1 reference

Europe PubMed Central

17 August 2017

Casey M Theriot

4

1 reference

Europe PubMed Central

17 August 2017

Vincent B Young

5

1 reference

Europe PubMed Central

17 August 2017

publication date

19 January 2016

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Europe PubMed Central

17 August 2017

1 reference

Europe PubMed Central

17 August 2017

1

1 reference

Europe PubMed Central

17 August 2017

1

1 reference

Europe PubMed Central

17 August 2017

maintained by WikiProject

WikiProject Ecology

1 reference

based on heuristic

inferred from title

The players may change but the game remains: network analyses of ruminal microbiomes suggest taxonomic differences mask functional similarity

1 reference

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1 reference

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Quantifying Diet-Induced Metabolic Changes of the Human Gut Microbiome.

1 reference

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Transmissible microbial and metabolomic remodeling by soluble dietary fiber improves metabolic homeostasis

1 reference

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1 reference

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Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms

1 reference

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Systematic prediction of health-relevant human-microbial co-metabolism through a computational framework

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MUSiCC: a marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome

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Metabolic signatures of bacterial vaginosis.

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29 September 2017

The networks of human gut microbe-metabolite associations are different between health and irritable bowel syndrome.

1 reference

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29 September 2017

Where next for microbiome research?

1 reference

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Gut microbiota-produced succinate promotes C. difficile infection after antibiotic treatment or motility disturbance

1 reference

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29 September 2017

Microbiome-metabolome analysis reveals unhealthy alterations in the composition and metabolism of ruminal microbiota with increasing dietary grain in a goat model

1 reference

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29 September 2017

Prediction and quantification of bioactive microbiota metabolites in the mouse gut.

1 reference

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29 September 2017

Commensal bacteria protect against food allergen sensitization

1 reference

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29 September 2017

Comparative analysis of functional metagenomic annotation and the mappability of short reads

1 reference

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Altering the Intestinal Microbiota during a Critical Developmental Window Has Lasting Metabolic Consequences

1 reference

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Emergent biosynthetic capacity in simple microbial communities

1 reference

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29 September 2017

Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome.

1 reference

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Distinct signatures of host-microbial meta-metabolome and gut microbiome in two C57BL/6 strains under high-fat diet

1 reference

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29 September 2017

Reprograming of gut microbiome energy metabolism by the FUT2 Crohn's disease risk polymorphism

1 reference

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Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships

1 reference

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29 September 2017

Comparative meta-RNA-seq of the vaginal microbiota and differential expression by Lactobacillus iners in health and dysbiosis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883586

29 September 2017

Antibiotic-induced shifts in the mouse gut microbiome and metabolome increase susceptibility to Clostridium difficile infection

1 reference

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Arsenic exposure perturbs the gut microbiome and its metabolic profile in mice: an integrated metagenomics and metabolomics analysis

1 reference

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29 September 2017

Diet rapidly and reproducibly alters the human gut microbiome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883586

29 September 2017

High-fat diet alters gut microbiota physiology in mice

1 reference

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Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

1 reference

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Stool microbiome and metabolome differences between colorectal cancer patients and healthy adults

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Towards a predictive systems-level model of the human microbiome: progress, challenges, and opportunities

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Intestinal microbiota metabolism of L-carnitine, a nutrient in red meat, promotes atherosclerosis

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Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease

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A metagenome-wide association study of gut microbiota in type 2 diabetes

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Search and clustering orders of magnitude faster than BLAST

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29 September 2017

QIIME allows analysis of high-throughput community sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883586

29 September 2017

PyNAST: a flexible tool for aligning sequences to a template alignment

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883586

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Metabolomics reveals metabolic biomarkers of Crohn's disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883586

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HMDB: a knowledgebase for the human metabolome

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Metabolite identification via the Madison Metabolomics Consortium Database

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/MSYSTEMS.00013-15

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release_asifyutdyvhqzd7pdk6b3p56iy

1 reference

https://api.fatcat.wiki/v0/release/asifyutdyvhqzd7pdk6b3p56iy

24 November 2022

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1 reference

Europe PubMed Central

17 August 2017

1 reference

Europe PubMed Central

17 August 2017

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