(Q36943702)

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Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation

scientific article published on 19 January 2016

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scholarly article

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Europe PubMed Central

PMC publication ID

17 August 2017

Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation (English)

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Europe PubMed Central

PMC publication ID

17 August 2017

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metabolomic profile

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Cecilia Noecker

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Cecilia Noecker

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Janet K Jansson

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Janet K Jansson

6

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Elhanan Borenstein

8

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Elhanan Borenstein

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Europe PubMed Central

PMC publication ID

17 August 2017

David N Fredricks

7

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David N Fredricks

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Europe PubMed Central

PMC publication ID

17 August 2017

author name string

Alexander Eng

2

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Europe PubMed Central

PMC publication ID

17 August 2017

Sujatha Srinivasan

3

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Europe PubMed Central

PMC publication ID

17 August 2017

Casey M Theriot

4

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Europe PubMed Central

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17 August 2017

Vincent B Young

5

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Europe PubMed Central

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17 August 2017

publication date

19 January 2016

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Europe PubMed Central

PMC publication ID

17 August 2017

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Europe PubMed Central

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17 August 2017

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Europe PubMed Central

PMC publication ID

17 August 2017

1

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

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WikiProject Ecology

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The players may change but the game remains: network analyses of ruminal microbiomes suggest taxonomic differences mask functional similarity

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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Metabolic signatures of bacterial vaginosis.

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The networks of human gut microbe-metabolite associations are different between health and irritable bowel syndrome.

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Microbiome-metabolome analysis reveals unhealthy alterations in the composition and metabolism of ruminal microbiota with increasing dietary grain in a goat model

1 reference

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1 reference

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Commensal bacteria protect against food allergen sensitization

1 reference

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Comparative analysis of functional metagenomic annotation and the mappability of short reads

1 reference

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Altering the Intestinal Microbiota during a Critical Developmental Window Has Lasting Metabolic Consequences

1 reference

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Emergent biosynthetic capacity in simple microbial communities

1 reference

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Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome.

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Distinct signatures of host-microbial meta-metabolome and gut microbiome in two C57BL/6 strains under high-fat diet

1 reference

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Reprograming of gut microbiome energy metabolism by the FUT2 Crohn's disease risk polymorphism

1 reference

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Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships

1 reference

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Comparative meta-RNA-seq of the vaginal microbiota and differential expression by Lactobacillus iners in health and dysbiosis.

1 reference

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Antibiotic-induced shifts in the mouse gut microbiome and metabolome increase susceptibility to Clostridium difficile infection

1 reference

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Arsenic exposure perturbs the gut microbiome and its metabolic profile in mice: an integrated metagenomics and metabolomics analysis

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Diet rapidly and reproducibly alters the human gut microbiome

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High-fat diet alters gut microbiota physiology in mice

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Search and clustering orders of magnitude faster than BLAST

1 reference

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QIIME allows analysis of high-throughput community sequencing data

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883586

29 September 2017

PyNAST: a flexible tool for aligning sequences to a template alignment

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HMDB: a knowledgebase for the human metabolome

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12 December 2020

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inferred from PubMed ID database lookup

Metabolite identification via the Madison Metabolomics Consortium Database

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/MSYSTEMS.00013-15

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release_asifyutdyvhqzd7pdk6b3p56iy

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https://api.fatcat.wiki/v0/release/asifyutdyvhqzd7pdk6b3p56iy

24 November 2022

based on heuristic

mapped directly with Wikidata item

PMC publication ID

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Europe PubMed Central

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17 August 2017

PubMed publication ID

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Europe PubMed Central

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17 August 2017

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