(Q37154679)

18 August 2017

AFM for analysis of structure and dynamics of DNA and protein-DNA complexes (English)

1 reference

18 August 2017

0 references

Yuri L Lyubchenko

1

1 reference

PMCID

2667448

18 August 2017

Luda S Shlyakhtenko

series ordinal

2

1 reference

18 August 2017

7 October 2008

1 reference

18 August 2017

1 reference

18 August 2017

47

1 reference

18 August 2017

206-213

1 reference

18 August 2017

3

1 reference

High-speed AFM and nano-visualization of biomolecular processes

18 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Direct visualization of the EcoRII-DNA triple synaptic complex by atomic force microscopy

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Single-molecule selection and recovery of structure-specific antibodies using atomic force microscopy

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Fast-scan atomic force microscopy reveals that the type III restriction enzyme EcoP15I is capable of DNA translocation and looping

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Dynamics of synaptic SfiI-DNA complex: single-molecule fluorescence analysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Effect of DNA supercoiling on the geometry of holliday junctions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Nanotools for megaproblems: probing protein misfolding diseases using nanomedicine modus operandi

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Site-specific labeling of supercoiled DNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Real-time imaging of DNA-streptavidin complex formation in solution using a high-speed atomic force microscope.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Nanoimaging for protein misfolding and related diseases

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

DNA strand arrangement within the SfiI-DNA complex: atomic force microscopy analysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

DNA structure and dynamics: an atomic force microscopy study

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Single chain variable fragments against beta-amyloid (Abeta) can inhibit Abeta aggregation and prevent abeta-induced neurotoxicity

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Inhibiting aggregation of alpha-synuclein with human single chain antibody fragments

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Residues 17-20 and 30-35 of beta-amyloid play critical roles in aggregation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Intersegmental interactions in supercoiled DNA: atomic force microscope study

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Role of DNA sequence in nucleosome stability and dynamics

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

A high-speed atomic force microscope for studying biological macromolecules.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

SfiI endonuclease activity is strongly influenced by the non-specific sequence in the middle of its recognition site

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Direct observation of one-dimensional diffusion and transcription by Escherichia coli RNA polymerase

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Atomic force microscopy: a powerful tool to observe biomolecules at work

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Scanning force microscopy under aqueous solutions.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Superhelix dimensions of a 1868 base pair plasmid determined by scanning force microscopy in air and in aqueous solution.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Visualization of supercoiled DNA with atomic force microscopy in situ

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Visualizing protein-nucleic acid interactions on a large scale with the scanning force microscope

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Effect of supercoiling on the juxtaposition and relative orientation of DNA sites

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Sequence-specific labeling of superhelical DNA by triple helix formation and psoralen crosslinking

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Knotting of a DNA chain during ring closure

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Atomic force microscopy of long DNA: imaging in air and under water

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Atomic force microscope measurements of nucleosome cores assembled along defined DNA sequences

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Biomolecular imaging with the atomic force microscope

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Following the assembly of RNA polymerase-DNA complexes in aqueous solutions with the scanning force microscope

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Applications for atomic force microscopy of DNA.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

High-resolution atomic-force microscopy of DNA: the pitch of the double helix

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Imaging crystals, polymers, and processes in water with the atomic force microscope

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Substrate preparation for reliable imaging of DNA molecules with the scanning force microscope.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Atomic force microscopy of DNA molecules

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Circular DNA molecules imaged in air by scanning force microscopy

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Atomic force microscopy of DNA on mica and chemically modified mica

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Structure and dynamics of three-way DNA junctions: atomic force microscopy studies

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

The effect of ionic conditions on DNA helical repeat, effective diameter and free energy of supercoiling

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Interaction of the Zalpha domain of human ADAR1 with a negatively supercoiled plasmid visualized by atomic force microscopy

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Proteolytic antibody light chains alter beta-amyloid aggregation and prevent cytotoxicity

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Atomic force microscopy of DNA and bacteriophage in air, water and propanol: the role of adhesion forces

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Atomic force microscopy of nucleoprotein complexes

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Probing Interactions within the synaptic DNA-SfiI complex by AFM force spectroscopy

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Silatrane-based surface chemistry for immobilization of DNA, protein-DNA complexes and other biological materials

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Structure and dynamics of supercoil-stabilized DNA cruciforms.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

From bench to bedside: successful translational nanomedicine: highlights of the Third Annual Meeting of the American Academy of Nanomedicine.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

New technology and clinical applications of nanomedicine: highlights of the second annual meeting of the American Academy of Nanomedicine (Part I).

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Nanomedicine and protein misfolding diseases.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Atomic force microscopy analysis of the Huntington protein nanofibril formation

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Forcing nonamyloidogenic beta-synuclein to fibrillate

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Effects of nitration on the structure and aggregation of alpha-synuclein

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Regulation of poly(ADP-ribose) polymerase-1 by DNA structure-specific binding

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

DNA recombination: holliday junctions dynamics and branch migration.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667448

Atomic force microscopy imaging of double stranded DNA and RNA

3 September 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2008.09.002

Immobilizing DNA on gold via thiol modification for atomic force microscopy imaging in buffer solutions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2008.09.002

Biochemical and structural applications of scanning force microscopy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2008.09.002

The structure of intramolecular triplex DNA: atomic force microscopy study

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2008.09.002

Supercoiling-induced DNA bending

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2008.09.002

Laser capture microdissection as an aid to ultrastructural analysis.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2008.09.002

Mapping nucleosome locations on the 208-12 by AFM provides clear evidence for cooperativity in array occupation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2008.09.002

A cruciform structural transition provides a molecular switch for chromosome structure and dynamics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2008.09.002

Superhelix organization by DNA curvature as measured through site-specific labeling

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2008.09.002

Scanning force microscopy of the complexes of p53 core domain with supercoiled DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2008.09.002

Time-lapse imaging of conformational changes in supercoiled DNA by scanning force microscopy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2008.09.002

Specific binding of poly(ADP-ribose) polymerase-1 to cruciform hairpins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2008.09.002

Structure of three-way DNA junctions. 2. Effects of extra bases and mismatches

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2008.09.002

Structure of three-way DNA junctions. 1. Non-planar DNA geometry

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2008.09.002

Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2008.09.002

Protein interactions and misfolding analyzed by AFM force spectroscopy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2008.09.002

Conformational heterogeneity of surface-grafted amyloidogenic fragments of alpha-synuclein dimers detected by atomic force microscopy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2008.09.002

Atomic force microscopy of DNA, nucleoproteins and cellular complexes: the use of functionalized substrates

7 January 2021

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18835446

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Atomic force microscopy of DNA and protein-DNA complexes using functionalized mica substrates

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18835446

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.YMETH.2008.09.002

1 reference

18 August 2017

1 reference

18 August 2017

1 reference

PMCID

2667448