(Q37480774)

20 August 2017

Relaxation of backbone bond geometry improves protein energy landscape modeling (English)

1 reference

20 August 2017

1 reference

David Baker

5

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author name string

Patrick Conway

1

1 reference

20 August 2017

Michael D Tyka

2

1 reference

20 August 2017

Frank DiMaio

3

1 reference

20 August 2017

David E Konerding

4

1 reference

20 August 2017

1 January 2014

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20 August 2017

1 reference

20 August 2017

23

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20 August 2017

1

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20 August 2017

47-55

1 reference

Scientific benchmarks for guiding macromolecular energy function improvement

20 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3892298

Efficient sampling of protein conformational space using fast loop building and batch minimization on highly parallel computers

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3892298

Algorithm discovery by protein folding game players

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3892298

Alternate states of proteins revealed by detailed energy landscape mapping

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3892298

Using a conformation-dependent stereochemical library improves crystallographic refinement of proteins

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3892298

MolProbity: all-atom structure validation for macromolecular crystallography

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3892298

CHARMM: the biomolecular simulation program

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3892298

Macromolecular modeling with rosetta

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3892298

Stereochemical restraints revisited: how accurate are refinement targets and how much should protein structures be allowed to deviate from them?

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3892298

Protein structure prediction using Rosetta

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3892298

CHARMM fluctuating charge force field for proteins: I parameterization and application to bulk organic liquid simulations.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3892298

New methodology for computer-aided modelling of biomolecular structure and dynamics. 1. Non-cyclic structures

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3892298

Charge-on-spring polarizable water models revisited: From water clusters to liquid water to ice

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3892298

3 December 2018

Identifiers

DOI

10.1002/PRO.2389

1 reference

20 August 2017

1 reference

20 August 2017

PubMed publication ID

24265211

1 reference