(Q37574155)

21 August 2017

Integrated analysis of transcript-level regulation of metabolism reveals disease-relevant nodes of the human metabolic network (English)

1 reference

21 August 2017

1 reference

6

Merja Heinäniemi

1 reference

21 August 2017

Jake Lin

4

0 references

author name string

Mafalda Galhardo

1

1 reference

21 August 2017

Lasse Sinkkonen

2

1 reference

21 August 2017

Philipp Berninger

3

1 reference

21 August 2017

Thomas Sauter

5

1 reference

21 August 2017

language of work or name

English

0 references

publication date

5 November 2013

1 reference

21 August 2017

Nucleic Acids Research

1 reference

21 August 2017

42

1 reference

21 August 2017

3

1 reference

21 August 2017

1474-1496

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

21 August 2017

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/3919568

inferred from PubMed Central ID database lookup

SQL

1 reference

26 June 2022

https://europepmc.org/article/PMC/PMC3919568

inferred from PubMed Central ID database lookup

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A community-driven global reconstruction of human metabolism.

23 August 2017

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Genome-wide analysis of LXRα activation reveals new transcriptional networks in human atherosclerotic foam cells

23 August 2017

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MiR-27 as a prognostic marker for breast cancer progression and patient survival

23 August 2017

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Choline kinase alpha and hexokinase-2 protein expression in hepatocellular carcinoma: association with survival

23 August 2017

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Circulating branched-chain amino acid concentrations are associated with obesity and future insulin resistance in children and adolescents.

23 August 2017

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Integration of expression data in genome-scale metabolic network reconstructions

23 August 2017

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MicroRNA-27b is a regulatory hub in lipid metabolism and is altered in dyslipidemia

23 August 2017

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MicroRNA-143 down-regulates Hexokinase 2 in colon cancer cells

23 August 2017

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Interplay between lipids and branched-chain amino acids in development of insulin resistance

23 August 2017

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MicroRNAs in metabolism and metabolic disorders

23 August 2017

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Transcriptional integration of metabolism by the nuclear sterol-activated receptors LXR and FXR.

23 August 2017

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Dataset integration identifies transcriptional regulation of microRNA genes by PPARγ in differentiating mouse 3T3-L1 adipocytes

23 August 2017

1 reference

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Transient infantile hypertriglyceridemia, fatty liver, and hepatic fibrosis caused by mutated GPD1, encoding glycerol-3-phosphate dehydrogenase 1

23 August 2017

1 reference

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Genome-wide profiling of liver X receptor, retinoid X receptor, and peroxisome proliferator-activated receptor α in mouse liver reveals extensive sharing of binding sites

23 August 2017

1 reference

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The human metabolic reconstruction Recon 1 directs hypotheses of novel human metabolic functions

23 August 2017

1 reference

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Cross species comparison of C/EBPα and PPARγ profiles in mouse and human adipocytes reveals interdependent retention of binding sites

23 August 2017

1 reference

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MicroRNA-663 upregulated by oscillatory shear stress plays a role in inflammatory response of endothelial cells

23 August 2017

1 reference

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EpiChIP: gene-by-gene quantification of epigenetic modification levels

23 August 2017

1 reference

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Multi-tissue, selective PPARγ modulation of insulin sensitivity and metabolic pathways in obese rats

23 August 2017

1 reference

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Comparative epigenomic analysis of murine and human adipogenesis

23 August 2017

1 reference

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DisGeNET: a Cytoscape plugin to visualize, integrate, search and analyze gene-disease networks

23 August 2017

1 reference

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An essential role for Dicer in adipocyte differentiation

23 August 2017

1 reference

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GREAT improves functional interpretation of cis-regulatory regions

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

AutoSOME: a clustering method for identifying gene expression modules without prior knowledge of cluster number

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

MicroRNA activity is suppressed in mouse oocytes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Adipose tissue branched chain amino acid (BCAA) metabolism modulates circulating BCAA levels.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

miR-27a is a negative regulator of adipocyte differentiation via suppressing PPARgamma expression

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

LXR regulates cholesterol uptake through Idol-dependent ubiquitination of the LDL receptor

23 August 2017

1 reference

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A role of miR-27 in the regulation of adipogenesis

23 August 2017

1 reference

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MicroRNA let-7 regulates 3T3-L1 adipogenesis

23 August 2017

1 reference

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

23 August 2017

1 reference

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Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

23 August 2017

1 reference

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Peroxisome proliferator-activated receptor gamma agonists as insulin sensitizers: from the discovery to recent progress

23 August 2017

1 reference

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Genome-wide profiling of PPARgamma:RXR and RNA polymerase II occupancy reveals temporal activation of distinct metabolic pathways and changes in RXR dimer composition during adipogenesis

23 August 2017

1 reference

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miR-17-92 cluster accelerates adipocyte differentiation by negatively regulating tumor-suppressor Rb2/p130

23 August 2017

1 reference

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Computational analysis of small RNA cloning data

23 August 2017

1 reference

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A mammalian microRNA expression atlas based on small RNA library sequencing

23 August 2017

1 reference

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A common allele on chromosome 9 associated with coronary heart disease

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Global reconstruction of the human metabolic network based on genomic and bibliomic data

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Transcriptional control of adipocyte formation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Human microRNA (miR29b) expression controls the amount of branched chain alpha-ketoacid dehydrogenase complex in a cell.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Enzymes of triacylglycerol synthesis and their regulation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Characterization of a human preadipocyte cell strain with high capacity for adipose differentiation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Lipodystrophy in the fld mouse results from mutation of a new gene encoding a nuclear protein, lipin

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Mutations in the Delta1-pyrroline 5-carboxylate dehydrogenase gene cause type II hyperprolinemia

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Mammalian mitochondrial glycerol-3-phosphate acyltransferase

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Assignment of the human gene for the low density lipoprotein receptor to chromosome 19: synteny of a receptor, a ligand, and a genetic disease

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Tissue lipoprotein lipase in normal individuals and in individuals with exogenous hypertriglyceridemia and the relationship of this enzyme to assimilation of fat

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Current concept of reverse cholesterol transport and novel strategy for atheroprotection

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Metabolism in the age of 'omes'.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Acyl-CoA synthetase 1 is required for oleate and linoleate mediated inhibition of cholesterol efflux through ATP-binding cassette transporter A1 in macrophages

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Optimal regulatory strategies for metabolic pathways in Escherichia coli depending on protein costs.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Microarray analyses of SREBP-1a and SREBP-1c target genes identify new regulatory pathways in muscle

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Endothelium-derived nitric oxide: pharmacology and relationship to the actions of organic nitrate esters

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Farnesyl pyrophosphate regulates adipocyte functions as an endogenous PPARγ agonist.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Global microRNA expression profiles in insulin target tissues in a spontaneous rat model of type 2 diabetes.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

The selective Alzheimer's disease indicator-1 gene (Seladin-1/DHCR24) is a liver X receptor target gene

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Alpha,beta-unsaturated ketone is a core moiety of natural ligands for covalent binding to peroxisome proliferator-activated receptor gamma.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Short-term regulation of hydroxymethylglutaryl coenzyme A reductase by reversible phosphorylation: modulation of reductase phosphatase in rat hepatocytes

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Genome-wide profiling of peroxisome proliferator-activated receptor γ in primary epididymal, inguinal, and brown adipocytes reveals depot-selective binding correlated with gene expression

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Species-specific strategies underlying conserved functions of metabolic transcription factors

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Cell-specific determinants of peroxisome proliferator-activated receptor gamma function in adipocytes and macrophages

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Regulation of hepatic fatty acid elongase 5 by LXRalpha-SREBP-1c

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

MicroRNAs control de novo DNA methylation through regulation of transcriptional repressors in mouse embryonic stem cells

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Overexpression of micro ribonucleic acid 29, highly up-regulated in diabetic rats, leads to insulin resistance in 3T3-L1 adipocytes

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Gene Expression Dynamics Inspector (GEDI): for integrative analysis of expression profiles

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

MicroRNA-29a-c decrease fasting blood glucose levels by negatively regulating hepatic gluconeogenesis

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Integration of metabolomics and expression of glycerol-3-phosphate acyltransferase (GPAM) in breast cancer-link to patient survival, hormone receptor status, and metabolic profiling

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

miChip: an array-based method for microRNA expression profiling using locked nucleic acid capture probes

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919568

Lipoprotein lipase and lipid metabolism in muscle and adipose tissues of Zucker rats

3 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24198249

12 December 2020

inferred from PubMed ID database lookup

Network-based prediction of human tissue-specific metabolism

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24198249

12 December 2020

inferred from PubMed ID database lookup

microRNA miR-27b impairs human adipocyte differentiation and targets PPARgamma

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24198249

12 December 2020

inferred from PubMed ID database lookup

An integrated encyclopedia of DNA elements in the human genome

1 reference

COCI

https://opencitations.net/index/coci/api/v1/citations/10.1038/NATURE11247

15 July 2023

Identifiers

DOI

10.1093/NAR/GKT989

1 reference

21 August 2017

1 reference

21 August 2017

PubMed publication ID

24198249

1 reference