(Q37610057)

21 August 2017

Critical decisions in metaproteomics: achieving high confidence protein annotations in a sea of unknowns (English)

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21 August 2017

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7

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21 August 2017

Damon H May

2

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Michael Riffle

object named as

Michael Riffle

4

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author name string

Emma Timmins-Schiffman

1

1 reference

21 August 2017

Molly Mikan

3

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21 August 2017

Chris Frazar

5

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21 August 2017

H R Harvey

6

1 reference

21 August 2017

Brook L Nunn

8

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21 August 2017

8 November 2016

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21 August 2017

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21 August 2017

11

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21 August 2017

2

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21 August 2017

309-314

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Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International

21 August 2017

start time

8 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Tandem Mass Spectrum Identification via Cascaded Search

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270573

Ocean plankton. Structure and function of the global ocean microbiome

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270573

Trans-Proteomic Pipeline, a standardized data processing pipeline for large-scale reproducible proteomics informatics

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270573

Metaproteomics reveals differential modes of metabolic coupling among ubiquitous oxygen minimum zone microbes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270573

Evaluating the impact of different sequence databases on metaproteome analysis: insights from a lab-assembled microbial mixture

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270573

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270573

A two-step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270573

Comet: an open-source MS/MS sequence database search tool

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270573

Strategies for metagenomic-guided whole-community proteomics of complex microbial environments

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270573

An iterative workflow for mining the human intestinal metaproteome

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270573

A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270573

Trans-proteomic pipeline: a pipeline for proteomic analysis

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270573

BLAST+: architecture and applications

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270573

Basic local alignment search tool

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270573

Gene and translation initiation site prediction in metagenomic sequences

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270573

A deeper look into Comet--implementation and features

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270573

An Alignment-Free "Metapeptide" Strategy for Metaproteomic Characterization of Microbiome Samples Using Shotgun Metagenomic Sequencing

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270573

Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270573

1 September 2018

Identifiers

DOI

10.1038/ISMEJ.2016.132

1 reference

21 August 2017

1 reference

21 August 2017

PubMed publication ID

27824341

1 reference