(Q37626318)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24317489%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

title

Transcription-generated torsional stress destabilizes nucleosomes (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24317489%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24317489%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

author name string

Steven Henikoff

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24317489%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

publication date

8 December 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24317489%20AND%20SRC:MED&resulttype=core&format=json

Nature Structural & Molecular Biology

2 March 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24317489%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

volume

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24317489%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24317489%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

page(s)

88-94

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24317489%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1038/nsmb.2723

2 March 2020

exact match

0 references

cites work

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Transcription-dependent dynamic supercoiling is a short-range genomic force

23 August 2017

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Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures

23 August 2017

1 reference

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Heat shock reduces stalled RNA polymerase II and nucleosome turnover genome-wide

23 August 2017

1 reference

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23 August 2017

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Topoisomerase II binds nucleosome-free DNA and acts redundantly with topoisomerase I to enhance recruitment of RNA Pol II in budding yeast.

23 August 2017

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Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation

23 August 2017

1 reference

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H2A.Z nucleosomes enriched over active genes are homotypic

23 August 2017

1 reference

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A method for genome-wide analysis of DNA helical tension by means of psoralen-DNA photobinding

23 August 2017

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Transcription within condensed chromatin: Steric hindrance facilitates elongation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947361

Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila

23 August 2017

1 reference

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Nucleosome assembly depends on the torsion in the DNA molecule: a magnetic tweezers study

23 August 2017

1 reference

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DNA topoisomerase I inhibition by camptothecin induces escape of RNA polymerase II from promoter-proximal pause site, antisense transcription and histone acetylation at the human HIF-1alpha gene locus

23 August 2017

1 reference

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The logic of chromatin architecture and remodelling at promoters

23 August 2017

1 reference

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Genome-wide profiling of salt fractions maps physical properties of chromatin

23 August 2017

1 reference

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Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

23 August 2017

1 reference

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Divergent transcription from active promoters

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947361

Nucleosome organization in the Drosophila genome.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947361

RNA polymerase is poised for activation across the genome

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947361

Drosophila Rtf1 functions in histone methylation, gene expression, and Notch signaling

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947361

Transcriptional consequences of topoisomerase inhibition

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947361

Stably maintained microdomain of localized unrestrained supercoiling at a Drosophila heat shock gene locus

23 August 2017

1 reference

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Identification of human DNA topoisomerase I as a cofactor for activator-dependent transcription by RNA polymerase II.

23 August 2017

1 reference

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DNA-protein interactions in the Drosophila melanogaster mitochondrial genome as deduced from trimethylpsoralen crosslinking patterns

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947361

Nucleosomes inhibit the initiation of transcription but allow chain elongation with the displacement of histones

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947361

In vivo localization of DNA topoisomerase II cleavage sites on Drosophila heat shock chromatin

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947361

Eukaryotic type I topoisomerase is enriched in the nucleolus and catalytically active on ribosomal DNA.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947361

Supercoiling of the DNA template during transcription

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947361

Positive DNA supercoiling generates a chromatin conformation characteristic of highly active genes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947361

RNA polymerase II pauses at the 5' end of the transcriptionally induced Drosophila hsp70 gene

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947361

Transcription of nucleosomes from human chromatin

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947361

Localization of RNA polymerase in polytene chromosomes of Drosophila melanogaster

23 August 2017

1 reference

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Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones

23 August 2017

1 reference

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Loss of HCF-1-chromatin association precedes temperature-induced growth arrest of tsBN67 cells

6 September 2017

1 reference

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Extensive demethylation of repetitive elements during seed development underlies gene imprinting

6 September 2017

1 reference

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Measurement of unrestrained negative supercoiling and topological domain size in living human cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947361

Fractionation of nucleosomes by salt elution from micrococcal nuclease-digested nuclei

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947361

Transcriptional inhibition by DNA torsional stress.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947361

Topoisomerases, chromatin and transcription termination.

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947361

High-resolution genome-wide mapping of the primary structure of chromatin

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947361

Topoisomerase I regulates open chromatin and controls gene expression in vivo

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947361

Rapid, transcription-independent loss of nucleosomes over a large chromatin domain at Hsp70 loci

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947361

DNA topoisomerase I is involved in both repression and activation of transcription

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947361

Specialized chromatin structure domain boundary elements flanking a Drosophila heat shock gene locus are under torsional strain in vivo.

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947361

Supercoiling of intracellular DNA can occur in eukaryotic cells.

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947361

Camptothecin-stabilized topoisomerase I-DNA adducts cause premature termination of transcription

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947361

Doxorubicin enhances nucleosome turnover around promoters

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947361

Visualization of unconstrained negative supercoils of DNA on polytene chromosomes of Drosophila

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3947361

Dynamics of DNA Supercoils

1 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNSMB.2723

Effect of differential gene expression on the chromatin structure of the DHFR gene domain in vivo

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNSMB.2723

Need for DNA topoisomerase activity as a swivel for DNA replication for transcription of ribosomal RNA

31 March 2020

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNSMB.2723

DNA topoisomerase activity is required as a swivel for DNA replication and for ribosomal RNA transcription

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24317489

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Factor-stimulated RNA polymerase II transcribes at physiological elongation rates on naked DNA but very poorly on chromatin templates

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24317489

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NSMB.2723

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24317489%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24317489%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

PubMed publication ID

24317489

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24317489%20AND%20SRC:MED&resulttype=core&format=json