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The ribosome-engaged landscape of alternative splicing
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scholarly article
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Europe PubMed Central
PMCID
5295628
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21 August 2017
title
The ribosome-engaged landscape of alternative splicing
(English)
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Europe PubMed Central
PMCID
5295628
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21 August 2017
main subject
RNA sequencing
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alternative mRNA splicing, via spliceosome
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author
Robert J Weatheritt
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Robert J Weatheritt
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1
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Benjamin J. Blencowe
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3
object named as
Benjamin J Blencowe
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Europe PubMed Central
PMCID
5295628
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21 August 2017
author name string
Timothy Sterne-Weiler
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2
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Europe PubMed Central
PMCID
5295628
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21 August 2017
publication date
7 November 2016
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Europe PubMed Central
PMCID
5295628
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21 August 2017
published in
Nature Structural & Molecular Biology
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Europe PubMed Central
PMCID
5295628
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21 August 2017
volume
23
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Europe PubMed Central
PMCID
5295628
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21 August 2017
page(s)
1117-1123
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Europe PubMed Central
PMCID
5295628
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21 August 2017
issue
12
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Europe PubMed Central
PMCID
5295628
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21 August 2017
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Cytoscape
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Europe PubMed Central
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9 June 2022
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https://europepmc.org/search?query=(METHODS:'Cytoscape')
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Bayes' theorem
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18 June 2022
reference URL
https://europepmc.org/article/PMC/5295628
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https://scigraph.springernature.com/pub.10.1038/nsmb.3317
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PubMed Central
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23 August 2017
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23 August 2017
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Most highly expressed protein-coding genes have a single dominant isoform.
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23 August 2017
Genomic variation. Impact of regulatory variation from RNA to protein
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23 August 2017
Translation of 5' leaders is pervasive in genes resistant to eIF2 repression
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23 August 2017
Detained introns are a novel, widespread class of post-transcriptionally spliced introns
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23 August 2017
Building robust transcriptomes with master splicing factors
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PubMed Central
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23 August 2017
Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes
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23 August 2017
Ensembl 2015
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PubMed Central
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23 August 2017
Widespread intron retention in mammals functionally tunes transcriptomes
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23 August 2017
Ribosome profiling reveals pervasive translation outside of annotated protein-coding genes
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PubMed Central
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23 August 2017
Intron retention in the 5'UTR of the novel ZIF2 transporter enhances translation to promote zinc tolerance in arabidopsis
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PubMed Central
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23 August 2017
A proteomic chronology of gene expression through the cell cycle in human myeloid leukemia cells
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5295628
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23 August 2017
Translational dynamics revealed by genome-wide profiling of ribosome footprints in Arabidopsis
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5295628
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23 August 2017
Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5295628
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23 August 2017
Ribosome profiling reveals features of normal and disease-associated mitochondrial translation
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5295628
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23 August 2017
Status of large-scale analysis of post-translational modifications by mass spectrometry
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5295628
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Human housekeeping genes, revisited
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PubMed Central
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23 August 2017
Frac-seq reveals isoform-specific recruitment to polyribosomes
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5295628
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23 August 2017
Evolutionary dynamics of gene and isoform regulation in Mammalian tissues.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5295628
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23 August 2017
Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution
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23 August 2017
Coordinated regulation of neuronal mRNA steady-state levels through developmentally controlled intron retention
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PubMed Central
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23 August 2017
Insights into the regulation of protein abundance from proteomic and transcriptomic analyses
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23 August 2017
Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes
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PubMed Central
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23 August 2017
Enrichment map: a network-based method for gene-set enrichment visualization and interpretation
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5295628
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Differential expression analysis for sequence count data
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PubMed Central
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23 August 2017
Mammalian microRNAs predominantly act to decrease target mRNA levels
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PubMed Central
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23 August 2017
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
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PubMed Central
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23 August 2017
Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
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PubMed Central
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23 August 2017
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5295628
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23 August 2017
Alternative isoform regulation in human tissue transcriptomes
1 reference
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PubMed Central
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23 August 2017
Neuronal regulation of alternative pre-mRNA splicing
1 reference
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PubMed Central
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23 August 2017
Protein modularity of alternatively spliced exons is associated with tissue-specific regulation of alternative splicing
1 reference
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PubMed Central
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Identification of genes periodically expressed in the human cell cycle and their expression in tumors
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PubMed Central
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23 August 2017
Regulation of Poly(A) Tail and Translation during the Somatic Cell Cycle.
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6 September 2017
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6 September 2017
Insights into the anaphase-promoting complex: a molecular machine that regulates mitosis
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6 September 2017
The translational landscape of the mammalian cell cycle
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6 September 2017
Linear motifs: lost in (pre)translation
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PubMed Central
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6 September 2017
Mass spectrometry-based proteomics and network biology
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6 September 2017
Translational regulation of human neuronal nitric-oxide synthase by an alternatively spliced 5'-untranslated region leader exon
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14 September 2017
Ribosome Footprint Profiling of Translation throughout the Genome
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25 June 2018
Tissue-specific splicing of disordered segments that embed binding motifs rewires protein interaction networks
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PubMed Central
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25 June 2018
A comparative transcriptomic analysis reveals conserved features of stem cell pluripotency in planarians and mammals
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25 June 2018
An extensive program of periodic alternative splicing linked to cell cycle progression
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5295628
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1 September 2018
Orchestrated intron retention regulates normal granulocyte differentiation.
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1 September 2018
Linear motifs confer functional diversity onto splice variants
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5295628
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1 September 2018
Translational control of the rat angiotensin type 1a receptor by alternative splicing
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5295628
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1 September 2018
The evolutionary landscape of alternative splicing in vertebrate species
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5295628
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2 October 2018
Origin of introns by ‘intronization’ of exonic sequences
1 reference
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Crossref
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retrieved
21 January 2018
Identifiers
DOI
10.1038/NSMB.3317
1 reference
stated in
Europe PubMed Central
PMCID
5295628
retrieved
21 August 2017
PMCID
5295628
1 reference
stated in
Europe PubMed Central
PMCID
5295628
retrieved
21 August 2017
PubMed ID
27820807
1 reference
stated in
Europe PubMed Central
PMCID
5295628
retrieved
21 August 2017
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