(Q37685576)

22 August 2017

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns (English)

1 reference

22 August 2017

11

Rob Knight

1 reference

22 August 2017

6

Zhenjiang Zech Xu

1 reference

22 August 2017

1

Amnon Amir

1 reference

22 August 2017

2

Daniel McDonald

1 reference

22 August 2017

5

James T Morton

1 reference

22 August 2017

3

Jose A Navas-Molina

1 reference

22 August 2017

10

Antonio Gonzalez

1 reference

22 August 2017

9

Embriette R Hyde

1 reference

22 August 2017

Evguenia Kopylova

4

1 reference

22 August 2017

Eric P Kightley

series ordinal

7

1 reference

22 August 2017

Luke R Thompson

series ordinal

8

1 reference

22 August 2017

7 March 2017

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22 August 2017

1 reference

22 August 2017

2

1 reference

22 August 2017

2

1 reference

describes a project that uses

22 August 2017

Jupyter notebook file

1 reference

DADA2: High-resolution sample inference from Illumina amplicon data

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5340863

Phylogenetic and ecological factors impact the gut microbiota of two Neotropical primate species

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5340863

Minimum entropy decomposition: unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5340863

The Earth Microbiome project: successes and aspirations

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5340863

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5340863

EMPeror: a tool for visualizing high-throughput microbial community data

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5340863

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5340863

ART: a next-generation sequencing read simulator.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5340863

UCHIME improves sensitivity and speed of chimera detection

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5340863

Field guide to next-generation DNA sequencers

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5340863

Removing noise from pyrosequenced amplicons

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5340863

Search and clustering orders of magnitude faster than BLAST

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5340863

The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5340863

UniFrac: a new phylogenetic method for comparing microbial communities

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5340863

Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5340863

Basic local alignment search tool

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5340863

mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5340863

VSEARCH: a versatile open source tool for metagenomics

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5340863

LotuS: an efficient and user-friendly OTU processing pipeline.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5340863

10.1128/MSYSTEMS.00191-16

6 September 2017

Identifiers

DOI

1 reference

22 August 2017

1 reference

22 August 2017

PubMed publication ID

28289731

1 reference