(Q37694056)

English

Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome

scientific article published on 10 March 2017

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scholarly article

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Europe PubMed Central

22 August 2017

Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome (English)

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Europe PubMed Central

22 August 2017

31

object named as

Nicole Soranzo

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Marie-Claude Vohl

26

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Marie-Claude Vohl

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24

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Mark Lathrop

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Europe PubMed Central

22 August 2017

object named as

Avik Datta

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Dylan Aïssi

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Warren A. Cheung

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Warren A Cheung

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Daniel Mead

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Dirk S Paul

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Laura Clarke

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Florence Demenais

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Florence Demenais

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Paul Flicek

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Guillaume Bourque

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Guillaume Bourque

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Europe PubMed Central

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8

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Lu Chen

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Europe PubMed Central

22 August 2017

André Tchernof

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André Tchernof

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33

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Elin Grundberg

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Emmanuelle Bouzigon

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Emmanuelle Bouzigon

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Valérie SIROUX

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Valérie Siroux

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32

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Tomi Pastinen

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Europe PubMed Central

22 August 2017

author name string

Xiaojian Shao

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Europe PubMed Central

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Andréanne Morin

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22 August 2017

Tony Kwan

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Bing Ge

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Louella Vasquez

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Fiona Allum

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Frédéric Guénard

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Marie-Michelle Simon

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Elodie Boulier

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Adriana Redensek

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Stephen Watt

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Stephan Beck

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Isabelle Pin

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22 August 2017

Kate Downes

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22 August 2017

Hendrick G Stunnenberg

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22 August 2017

publication date

10 March 2017

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22 August 2017

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Europe PubMed Central

22 August 2017

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copyright license

Creative Commons Attribution 4.0 International

10 March 2017

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April 2022 Public Data File from Crossref

copyright status

0 references

https://scigraph.springernature.com/pub.10.1186/s13059-017-1173-7

0 references

Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells

1 reference

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23 August 2017

Immunoseq: the identification of functionally relevant variants through targeted capture and sequencing of active regulatory regions in human immune cells

1 reference

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23 August 2017

Population whole-genome bisulfite sequencing across two tissues highlights the environment as the principal source of human methylome variation

1 reference

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23 August 2017

The UCSC Genome Browser database: 2016 update

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23 August 2017

Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions

1 reference

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23 August 2017

Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5346261

23 August 2017

Human body epigenome maps reveal noncanonical DNA methylation variation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5346261

23 August 2017

Characterization of functional methylomes by next-generation capture sequencing identifies novel disease-associated variants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5346261

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Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers

1 reference

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23 August 2017

Integrative analysis of haplotype-resolved epigenomes across human tissues.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5346261

23 August 2017

Allelic expression mapping across cellular lineages to establish impact of non-coding SNPs

1 reference

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HTSeq--a Python framework to work with high-throughput sequencing data

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Interrogation of allelic chromatin states in human cells by high-density ChIP-genotyping.

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23 August 2017

Allele-specific methylation occurs at genetic variants associated with complex disease

1 reference

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Genetics of rheumatoid arthritis contributes to biology and drug discovery

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23 August 2017

Global analysis of DNA methylation variation in adipose tissue from twins reveals links to disease-associated variants in distal regulatory elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5346261

23 August 2017

Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis

1 reference

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Systematic localization of common disease-associated variation in regulatory DNA

1 reference

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23 August 2017

An integrated encyclopedia of DNA elements in the human genome

1 reference

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23 August 2017

Mapping cis- and trans-regulatory effects across multiple tissues in twins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5346261

23 August 2017

Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes

1 reference

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23 August 2017

Single nucleotide analysis of cytosine methylation by whole-genome shotgun bisulfite sequencing

1 reference

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23 August 2017

Bis-SNP: combined DNA methylation and SNP calling for Bisulfite-seq data

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RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

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23 August 2017

Genetics of gene expression in primary immune cells identifies cell type-specific master regulators and roles of HLA alleles

1 reference

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23 August 2017

ChromHMM: automating chromatin-state discovery and characterization

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23 August 2017

Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome

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23 August 2017

The DNA methylome of human peripheral blood mononuclear cells

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23 August 2017

GREAT improves functional interpretation of cis-regulatory regions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5346261

23 August 2017

Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5346261

23 August 2017

Multiple common variants for celiac disease influencing immune gene expression

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23 August 2017

Allelic skewing of DNA methylation is widespread across the genome

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23 August 2017

BEDTools: a flexible suite of utilities for comparing genomic features

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Finding the missing heritability of complex diseases

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23 August 2017

A flexible and accurate genotype imputation method for the next generation of genome-wide association studies

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23 August 2017

Fast and accurate short read alignment with Burrows-Wheeler transform

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TopHat: discovering splice junctions with RNA-Seq

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

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23 August 2017

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RNA splicing is a primary link between genetic variation and disease

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Genome-wide allelic methylation analysis reveals disease-specific susceptibility to multiple methylation defects in imprinting syndromes

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Biliopancreatic diversion with duodenal switch

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/S13059-017-1173-7

1 reference

Europe PubMed Central

22 August 2017

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1 reference

Europe PubMed Central

22 August 2017

1 reference

Europe PubMed Central

22 August 2017

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