(Q37802219)

23 August 2017

title

Mass spectrometry at the interface of proteomics and genomics (English)

1 reference

23 August 2017

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Boris Macek

3

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author name string

Karsten Krug

series ordinal

1

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23 August 2017

Sven Nahnsen

series ordinal

2

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23 August 2017

language of work or name

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21 October 2010

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23 August 2017

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23 August 2017

volume

7

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23 August 2017

issue

2

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23 August 2017

page(s)

284-291

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Predicting Shine-Dalgarno sequence locations exposes genome annotation errors

23 August 2017

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Intrinsic errors in genome annotation

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Proteomics-based confirmation of protein expression and correction of annotation errors in the Brucella abortus genome

21 January 2018

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Comparative gene prediction in human and mouse

21 January 2018

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C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression.

21 January 2018

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Leveraging the mouse genome for gene prediction in human: from whole-genome shotgun reads to a global synteny map.

21 January 2018

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Precision proteomics: the case for high resolution and high mass accuracy

21 January 2018

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Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

21 January 2018

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A proteomic view of an important human pathogen--towards the quantification of the entire Staphylococcus aureus proteome

21 January 2018

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Stable isotope labeling by amino acids in cell culture (SILAC) applied to quantitative proteomics of Bacillus subtilis

21 January 2018

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Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex

21 January 2018

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Proteomics reveals open reading frames in Mycobacterium tuberculosis H37Rv not predicted by genomics

21 January 2018

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An automated multidimensional protein identification technology for shotgun proteomics

21 January 2018

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Parallel identification of new genes in Saccharomyces cerevisiae

21 January 2018

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Proteogenomic mapping as a complementary method to perform genome annotation

21 January 2018

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21 January 2018

The PeptideAtlas project

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Improving gene annotation using peptide mass spectrometry

21 January 2018

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Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation

21 January 2018

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Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol.

21 January 2018

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Validating divergent ORF annotation of the Mycobacterium leprae genome through a full translation data set and peptide identification by tandem mass spectrometry

21 January 2018

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High accuracy mass spectrometry analysis as a tool to verify and improve gene annotation using Mycobacterium tuberculosis as an example

21 January 2018

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Discovery and revision of Arabidopsis genes by proteogenomics

21 January 2018

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Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics.

21 January 2018

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Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations

21 January 2018

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Proteogenomics of Pristionchus pacificus reveals distinct proteome structure of nematode models

21 January 2018

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Profiling core proteomes of human cell lines by one-dimensional PAGE and liquid chromatography-tandem mass spectrometry

21 January 2018

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Sample preparation and digestion for proteomic analyses using spin filters

21 January 2018

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Universal sample preparation method for proteome analysis

21 January 2018

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A novel chromatographic method allows on-line reanalysis of the proteome

21 January 2018

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Utility of mass spectrometry for proteome analysis: part I. Conceptual and experimental approaches

21 January 2018

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Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap

21 January 2018

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A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed.

21 January 2018

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Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry

21 January 2018

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Sub-part-per-million precursor and product mass accuracy for high-throughput proteomics on an electron transfer dissociation-enabled orbitrap mass spectrometer

21 January 2018

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MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

21 January 2018

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Probability-based protein identification by searching sequence databases using mass spectrometry data

21 January 2018

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Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database

21 January 2018

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Open mass spectrometry search algorithm

21 January 2018

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Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

21 January 2018

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Interpretation of shotgun proteomic data: the protein inference problem

21 January 2018

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Efficient decoding algorithms for generalized hidden Markov model gene finders

21 January 2018

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Microbial gene identification using interpolated Markov models

21 January 2018

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Prediction of complete gene structures in human genomic DNA

21 January 2018

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Gene finding in novel genomes

21 January 2018

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mGene: accurate SVM-based gene finding with an application to nematode genomes

21 January 2018

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mGene.web: a web service for accurate computational gene finding

21 January 2018

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Proteogenomics to discover the full coding content of genomes: a computational perspective

21 January 2018

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Whole genome searching with shotgun proteomic data: applications for genome annotation

21 January 2018

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21 January 2018

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Comparative proteogenomics: combining mass spectrometry and comparative genomics to analyze multiple genomes

21 January 2018

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Mass spectrometric genomic data mining: Novel insights into bioenergetic pathways in Chlamydomonas reinhardtii

21 January 2018

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A new approach that allows identification of intron-split peptides from mass spectrometric data in genomic databases

21 January 2018

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PepSplice: cache-efficient search algorithms for comprehensive identification of tandem mass spectra.

21 January 2018

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Microcolumns with self-assembled particle frits for proteomics

21 January 2018

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21 January 2018

Identifiers

DOI

10.1039/C0MB00168F

1 reference

23 August 2017

1 reference