(Q37839479)

English

DNA translocation by type III restriction enzymes: a comparison of current models of their operation derived from ensemble and single-molecule measurements

scientific article published on 10 February 2011

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

24 August 2017

3 references

2 August 2019

19 September 2019

28 September 2019

DNA translocation by type III restriction enzymes: a comparison of current models of their operation derived from ensemble and single-molecule measurements (English)

1 reference

Europe PubMed Central

PMC publication ID

24 August 2017

1 reference

2 August 2019

1 reference

2 August 2019

biomedical investigative technique

1 reference

19 September 2019

1 reference

28 September 2019

author name string

David T F Dryden

1

1 reference

Europe PubMed Central

PMC publication ID

24 August 2017

J M Edwardson

2

1 reference

Europe PubMed Central

PMC publication ID

24 August 2017

Robert M Henderson

3

1 reference

Europe PubMed Central

PMC publication ID

24 August 2017

language of work or name

0 references

publication date

10 February 2011

1 reference

Europe PubMed Central

PMC publication ID

24 August 2017

1 June 2011

3 references

2 August 2019

19 September 2019

28 September 2019

Nucleic Acids Research

4 references

Europe PubMed Central

PMC publication ID

24 August 2017

2 August 2019

19 September 2019

28 September 2019

39

1 reference

Europe PubMed Central

PMC publication ID

24 August 2017

11

1 reference

Europe PubMed Central

PMC publication ID

24 August 2017

4525-4531

1 reference

Europe PubMed Central

PMC publication ID

24 August 2017

copyright license

Creative Commons Attribution-NonCommercial 2.5 Generic

3 references

Europe PubMed Central

2 August 2019

Europe PubMed Central

19 September 2019

Europe PubMed Central

28 September 2019

High-throughput SuperSAGE for digital gene expression analysis of multiple samples using next generation sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

6 September 2017

Real-time fluorescence lifetime imaging system with a 32 x 32 0.13microm CMOS low dark-count single-photon avalanche diode array

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

6 September 2017

DNA synapsis through transient tetramerization triggers cleavage by Ecl18kI restriction enzyme.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

6 September 2017

Type III restriction enzymes cleave DNA by long-range interaction between sites in both head-to-head and tail-to-tail inverted repeat

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

6 September 2017

Maintaining a sense of direction during long-range communication on DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

6 September 2017

Diversity of DNA methyltransferases that recognize asymmetric target sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

6 September 2017

Visualizing protein-DNA interactions at the single-molecule level

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

6 September 2017

Type III restriction enzymes communicate in 1D without looping between their target sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

6 September 2017

Visualizing one-dimensional diffusion of proteins along DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

6 September 2017

Motor step size and ATP coupling efficiency of the dsDNA translocase EcoR124I.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

6 September 2017

Fast-scan atomic force microscopy reveals that the type III restriction enzyme EcoP15I is capable of DNA translocation and looping

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

6 September 2017

Tension-dependent DNA cleavage by restriction endonucleases: two-site enzymes are "switched off" at low force

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

6 September 2017

Strong physical constraints on sequence-specific target location by proteins on DNA molecules.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

6 September 2017

Characterization of the Type III restriction endonuclease PstII from Providencia stuartii.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

6 September 2017

DNA-tension dependence of restriction enzyme activity reveals mechanochemical properties of the reaction pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

6 September 2017

How do site-specific DNA-binding proteins find their targets?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

6 September 2017

Enzyme-mediated DNA looping

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

6 September 2017

Complex restriction enzymes: NTP-driven molecular motors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

6 September 2017

Nucleoside triphosphate-dependent restriction enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

6 September 2017

Subunit assembly and mode of DNA cleavage of the type III restriction endonucleases EcoP1I and EcoP15I.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

6 September 2017

Restriction endonuclease reactions requiring two recognition sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

6 September 2017

ATP-dependent restriction enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

6 September 2017

Type III restriction endonucleases translocate DNA in a reaction driven by recognition site-specific ATP hydrolysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

6 September 2017

NaeI endonuclease binding to pBR322 DNA induces looping

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

6 September 2017

Functional cooperation between exonucleases and endonucleases--basis for the evolution of restriction enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

14 September 2017

Counting CAG repeats in the Huntington's disease gene by restriction endonuclease EcoP15I cleavage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

14 September 2017

Unidirectional translocation from recognition site and a necessary interaction with DNA end for cleavage by Type III restriction enzyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

14 September 2017

Purification and properties of the P15 specific restriction endonuclease from Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

14 September 2017

S-adenosyl homocysteine and DNA ends stimulate promiscuous nuclease activities in the Type III restriction endonuclease EcoPI

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

23 June 2018

DNA looping and translocation provide an optimal cleavage mechanism for the type III restriction enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

23 June 2018

DNA looping by two-site restriction endonucleases: heterogeneous probability distributions for loop size and unbinding force

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

23 June 2018

Functional characterization and modulation of the DNA cleavage efficiency of type III restriction endonuclease EcoP15I in its interaction with two sites in the DNA target

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

1 September 2018

Atomic force microscopy of the EcoKI Type I DNA restriction enzyme bound to DNA shows enzyme dimerization and DNA looping

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

1 September 2018

Structural domains in the type III restriction endonuclease EcoP15I: characterization by limited proteolysis, mass spectrometry and insertional mutagenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

1 September 2018

Exogenous AdoMet and its analogue sinefungin differentially influence DNA cleavage by R.EcoP15I--usefulness in SAGE.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

1 September 2018

Scanning force microscopy of DNA translocation by the Type III restriction enzyme EcoP15I.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

1 September 2018

DNA cleavage by type III restriction-modification enzyme EcoP15I is independent of spacer distance between two head to head oriented recognition sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

1 September 2018

Cooperative binding properties of restriction endonuclease EcoRII with DNA recognition sites.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

1 September 2018

Type III restriction enzymes need two inversely oriented recognition sites for DNA cleavage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113558

1 September 2018

Formation of loops in DNA under tension

1 reference

https://pubmed.ncbi.nlm.nih.gov/21310716

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKQ1285

1 reference

Europe PubMed Central

PMC publication ID

24 August 2017

Internet Archive ID

pubmed-PMC3113558

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

24 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

24 August 2017

ResearchGate publication ID

0 references

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