(Q37844153)

24 August 2017

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title

Quantitative phosphoproteomics strategies for understanding protein kinase-mediated signal transduction pathways (English)

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24 August 2017

Hidetaka Kosako

1

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24 August 2017

Kohji Nagano

series ordinal

2

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24 August 2017

publication date

1 February 2011

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Expert Review of Proteomics

24 August 2017

published in

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24 August 2017

volume

8

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24 August 2017

issue

1

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24 August 2017

page(s)

81-94

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Signaling--2000 and beyond

24 August 2017

cites work

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Towards functional phosphoproteomics by mapping differential phosphorylation events in signaling networks

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Quantitative phosphoproteomic analysis of signaling network dynamics.

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Global and site-specific quantitative phosphoproteomics: principles and applications

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KESTREL: a powerful method for identifying the physiological substrates of protein kinases

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Covalent capture of kinase-specific phosphopeptides reveals Cdk1-cyclin B substrates.

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Global identification of protein kinase substrates by protein microarray analysis

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Current two-dimensional electrophoresis technology for proteomics

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Subtractive proteomic mapping of the endothelial surface in lung and solid tumours for tissue-specific therapy

21 January 2018

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Phosphoproteome profiling of transforming growth factor (TGF)-beta signaling: abrogation of TGFbeta1-dependent phosphorylation of transcription factor-II-I (TFII-I) enhances cooperation of TFII-I and Smad3 in transcription.

21 January 2018

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Difference gel electrophoresis: a single gel method for detecting changes in protein extracts

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Two-dimensional difference gel electrophoresis

21 January 2018

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The development of the DIGE system: 2D fluorescence difference gel analysis technology

21 January 2018

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All about DIGE: quantification technology for differential-display 2D-gel proteomics

21 January 2018

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Application of highly sensitive fluorescent dyes (CyDye DIGE Fluor saturation dyes) to laser microdissection and two-dimensional difference gel electrophoresis (2D-DIGE) for cancer proteomics

21 January 2018

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Quantitative detection of phosphoproteins by combination of two-dimensional difference gel electrophoresis and phosphospecific fluorescent staining

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Phosphoproteomics reveals new ERK MAP kinase targets and links ERK to nucleoporin-mediated nuclear transport

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Proteomic analysis of in vivo phosphorylated synaptic proteins.

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Efficient enrichment of intact phosphorylated proteins by modified immobilized metal-affinity chromatography.

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Purification of phosphoproteins by immobilized metal affinity chromatography and its application to phosphoproteome analysis

21 January 2018

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Proteomic identification of Bcl2-associated athanogene 2 as a novel MAPK-activated protein kinase 2 substrate

21 January 2018

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https://api.crossref.org/works/10.1586%2FEPR.10.104

Phosphoproteome study reveals Hsp27 as a novel signaling molecule involved in GDNF-induced neurite outgrowth

21 January 2018

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https://api.crossref.org/works/10.1586%2FEPR.10.104

Phosphoproteome dynamics reveal heat-shock protein complexes specific to the Leishmania donovani infectious stage

21 January 2018

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https://api.crossref.org/works/10.1586%2FEPR.10.104

Identification of endosomal epidermal growth factor receptor signaling targets by functional organelle proteomics

21 January 2018

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https://api.crossref.org/works/10.1586%2FEPR.10.104

BSKs mediate signal transduction from the receptor kinase BRI1 in Arabidopsis

21 January 2018

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The extracellular signal-regulated kinase: multiple substrates regulate diverse cellular functions

21 January 2018

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https://api.crossref.org/works/10.1586%2FEPR.10.104

Identification of novel ERK2 substrates through use of an engineered kinase and ATP analogs

21 January 2018

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https://api.crossref.org/works/10.1586%2FEPR.10.104

A semisynthetic epitope for kinase substrates.

21 January 2018

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https://api.crossref.org/works/10.1586%2FEPR.10.104

MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays

21 January 2018

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https://api.crossref.org/works/10.1586%2FEPR.10.104

Identification of novel MAP kinase pathway signaling targets by functional proteomics and mass spectrometry

21 January 2018

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https://api.crossref.org/works/10.1586%2FEPR.10.104

Identification of G2/M targets for the MAP kinase pathway by functional proteomics

21 January 2018

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https://api.crossref.org/works/10.1586%2FEPR.10.104

Phosphorylation of nucleoporins: signal transduction-mediated regulation of their interaction with nuclear transport receptors

21 January 2018

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https://api.crossref.org/works/10.1586%2FEPR.10.104

Mapping protein post-translational modifications with mass spectrometry

21 January 2018

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https://api.crossref.org/works/10.1586%2FEPR.10.104

Electrospray ionization mass spectrometry of phosphopeptides isolated by on-line immobilized metal-ion affinity chromatography

21 January 2018

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https://api.crossref.org/works/10.1586%2FEPR.10.104

Detection and sequencing of phosphopeptides affinity bound to immobilized metal ion beads by matrix-assisted laser desorption/ionization mass spectrometry

21 January 2018

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https://api.crossref.org/works/10.1586%2FEPR.10.104

Immobilized gallium(III) affinity chromatography of phosphopeptides

21 January 2018

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https://api.crossref.org/works/10.1586%2FEPR.10.104

Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae

21 January 2018

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https://api.crossref.org/works/10.1586%2FEPR.10.104

Requirements for protein phosphorylation and the kinase activity of polo-like kinase 1 (Plk1) for the kinetochore function of mitotic arrest deficiency protein 1 (Mad1).

21 January 2018

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Regulation of the Pro-apoptotic scaffolding protein POSH by Akt.

21 January 2018

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https://api.crossref.org/works/10.1586%2FEPR.10.104

Genetic and proteomic analyses of a proteasome-activating nucleotidase A mutant of the haloarchaeon Haloferax volcanii

21 January 2018

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https://api.crossref.org/works/10.1586%2FEPR.10.104

Phosphoproteomic analysis of distinct tumor cell lines in response to nocodazole treatment

21 January 2018

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https://api.crossref.org/works/10.1586%2FEPR.10.104

Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns.

21 January 2018

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https://api.crossref.org/works/10.1586%2FEPR.10.104

Large-scale characterization of HeLa cell nuclear phosphoproteins

21 January 2018

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https://api.crossref.org/works/10.1586%2FEPR.10.104

Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway

21 January 2018

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https://api.crossref.org/works/10.1586%2FEPR.10.104

Global, in vivo, and site-specific phosphorylation dynamics in signaling networks

21 January 2018

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https://api.crossref.org/works/10.1586%2FEPR.10.104

Large-scale phosphorylation analysis of mouse liver

21 January 2018

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A quantitative atlas of mitotic phosphorylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Hydrophilic interaction chromatography reduces the complexity of the phosphoproteome and improves global phosphopeptide isolation and detection

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Analysis of receptor signaling pathways by mass spectrometry: identification of vav-2 as a substrate of the epidermal and platelet-derived growth factor receptors

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Large-scale proteomic analysis of tyrosine-phosphorylation induced by T-cell receptor or B-cell receptor activation reveals new signaling pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Immunoaffinity profiling of tyrosine phosphorylation in cancer cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Improved peptide identification in proteomics by two consecutive stages of mass spectrometric fragmentation

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

A neutral loss activation method for improved phosphopeptide sequence analysis by quadrupole ion trap mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Evaluation of gas-phase rearrangement and competing fragmentation reactions on protein phosphorylation site assignment using collision induced dissociation-MS/MS and MS3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Gas-phase rearrangements do not affect site localization reliability in phosphoproteomics data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Comparative assessment of site assignments in CID and electron transfer dissociation spectra of phosphopeptides discloses limited relocation of phosphate groups

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Electron capture dissociation and infrared multiphoton dissociation MS/MS of an N-glycosylated tryptic peptic to yield complementary sequence information

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Large scale localization of protein phosphorylation by use of electron capture dissociation mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Performance characteristics of electron transfer dissociation mass spectrometry

21 January 2018

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https://api.crossref.org/works/10.1586%2FEPR.10.104

Decision tree-driven tandem mass spectrometry for shotgun proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

A probability-based approach for high-throughput protein phosphorylation analysis and site localization

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

SLoMo: automated site localization of modifications from ETD/ECD mass spectra.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Accurate quantitation of protein expression and site-specific phosphorylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Mass spectrometry-based proteomics turns quantitative

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

A software suite for the generation and comparison of peptide arrays from sets of data collected by liquid chromatography-mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS.

21 January 2018

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https://api.crossref.org/works/10.1586%2FEPR.10.104

MSight: an image analysis software for liquid chromatography-mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

TOPP--the OpenMS proteomics pipeline

21 January 2018

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https://api.crossref.org/works/10.1586%2FEPR.10.104

PEPPeR, a platform for experimental proteomic pattern recognition.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Functional proteomics identifies targets of phosphorylation by B-Raf signaling in melanoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Tandem Mass Tags: A Novel Quantification Strategy for Comparative Analysis of Complex Protein Mixtures by MS/MS

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Quantitative mouse brain proteomics using culture-derived isotope tags as internal standards

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Cross-talk between GlcNAcylation and phosphorylation: site-specific phosphorylation dynamics in response to globally elevated O-GlcNAc

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Improved method of phosphopeptides enrichment using biphasic phosphate-binding tag/C18 tip for versatile analysis of phosphorylation dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Quantitative phosphoproteomic analysis of the STAT3/IL-6/HIF1alpha signaling network: an initial study in GSC11 glioblastoma stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Species identification and vitamin A level in lutjanid fish implicated in vitamin A poisoning

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Systematic Discovery of In Vivo Phosphorylation Networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Extracellular signal-regulated kinase/mitogen-activated protein kinase regulates actin organization and cell motility by phosphorylating the actin cross-linking protein EPLIN

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

A sensitive mass spectrometric method for hypothesis-driven detection of peptide post-translational modifications: multiple reaction monitoring-initiated detection and sequencing (MIDAS).

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Epidermal growth factor receptor phosphorylation sites Ser991 and Tyr998 are implicated in the regulation of receptor endocytosis and phosphorylations at Ser1039 and Thr1041.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Identification and functional characterization of protein kinase A-catalyzed phosphorylation of potassium channel Kv1.2 at serine 449.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Absolute quantification of phosphorylation on the kinase activation loop of cellular focal adhesion kinase by stable isotope dilution liquid chromatography/mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Protein phosphatase 1 regulates the phosphorylation state of the polarity scaffold Par-3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Reproducible isolation of distinct, overlapping segments of the phosphoproteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Global effects of kinase inhibitors on signaling networks revealed by quantitative phosphoproteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Decoding signalling networks by mass spectrometry-based proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Selective Isolation at the Femtomole Level of Phosphopeptides from Proteolytic Digests Using 2D-NanoLC-ESI-MS/MS and Titanium Oxide Precolumns

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

Functional and quantitative proteomics using SILAC

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.10.104

21 January 2018

Identifiers

DOI

10.1586/EPR.10.104

1 reference

24 August 2017

1 reference