(Q37858616)

24 August 2017

1 reference

title

From nucleosome to chromosome: a dynamic organization of genetic information (English)

1 reference

24 August 2017

Paul Fransz

1

1 reference

PubMed ID

21443619

24 August 2017

Hans de Jong

series ordinal

2

1 reference

PubMed ID

21443619

24 August 2017

language of work or name

1 reference

1 April 2011

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24 August 2017

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24 August 2017

66

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24 August 2017

1

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24 August 2017

4-17

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Nucleosomes are well positioned in exons and carry characteristic histone modifications

24 August 2017

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Role of histone tails in chromatin folding revealed by a mesoscopic oligonucleosome model

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

A tale of tails: how histone tails mediate chromatin compaction in different salt and linker histone environments

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

The diameters of frozen-hydrated chromatin fibers increase with DNA linker length: evidence in support of variable diameter models for chromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

The relationship of the dispersion phase of chromocentric nuclei in the mitotic cycle to DNA synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Nucleosomes, linker DNA, and linker histone form a unique structural motif that directs the higher-order folding and compaction of chromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Interphase chromosome arrangement in Arabidopsis thaliana is similar in differentiated and meristematic tissues and shows a transient mirror symmetry after nuclear division

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Chromosome arrangement and nuclear architecture but not centromeric sequences are conserved between Arabidopsis thaliana and Arabidopsis lyrata.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Visualization of chromatin domains created by the gypsy insulator of Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Chromosome looping in yeast: telomere pairing and coordinated movement reflect anchoring efficiency and territorial organization

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Toward a cytological characterization of the rice genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Relationship between nucleosome positioning and DNA methylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Chromosome territories--a functional nuclear landscape.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Large-scale chromosomal movements during interphase progression in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Random GFP::cDNA fusions enable visualization of subcellular structures in cells of Arabidopsis at a high frequency

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Capturing chromosome conformation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Evidence against a looped structure of the inactive human X-chromosome territory

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Nucleosome arrays reveal the two-start organization of the chromatin fiber

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

The insulator binding protein CTCF associates with the nuclear matrix

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Conservation and divergence of methylation patterning in plants and animals

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Interphase chromosomes in Arabidopsis are organized as well defined chromocenters from which euchromatin loops emanate

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Composition and formation of heterochromatin in Arabidopsis thaliana.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

ChIP-based methods for the identification of long-range chromatin interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

The three-dimensional structure of human interphase chromosomes is related to the transcriptome map.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Evidence for heteromorphic chromatin fibers from analysis of nucleosome interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Mouse centric and pericentric satellite repeats form distinct functional heterochromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Variant histone H2A.Z is globally localized to the promoters of inactive yeast genes and regulates nucleosome positioning

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

The Arabidopsis blue light receptor cryptochrome 2 is a nuclear protein regulated by a blue light-dependent post-transcriptional mechanism

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Loss of the insulator protein CTCF during nematode evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Chromatin loops are selectively anchored using scaffold/matrix-attachment regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Spatial organization of chromosomes in the salivary gland nuclei of Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Methylation of histone H3 in euchromatin of plant chromosomes depends on basic nuclear DNA content

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Chromatin organization and its relation to replication and histone acetylation during the cell cycle in barley

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Histone modifications in Arabidopsis- high methylation of H3 lysine 9 is dispensable for constitutive heterochromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Size and number of tandem repeat arrays can determine somatic homologous pairing of transgene loci mediated by epigenetic modifications in Arabidopsis thaliana nuclei.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

The DNA-encoded nucleosome organization of a eukaryotic genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

H2A.Z-containing nucleosomes mediate the thermosensory response in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Transgenerational inheritance and resetting of stress-induced loss of epigenetic gene silencing in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Evidence for nucleosome depletion at active regulatory regions genome-wide

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

A high-resolution atlas of nucleosome occupancy in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Highly compacted chromatin formed in vitro reflects the dynamics of transcription activation in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

The Arabidopsis LHP1 protein is a component of euchromatin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Delineation of individual human chromosomes in metaphase and interphase cells by in situ suppression hybridization using recombinant DNA libraries

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Photoexcited CRY2 interacts with CIB1 to regulate transcription and floral initiation in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Tissue- and expression level-specific chromatin looping at maize b1 epialleles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Crystal structure of the nucleosome core particle at 2.8 A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Chromosome painting in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Chromatin structure: does the 30-nm fibre exist in vivo?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Acetylation of histone H3 at the nucleosome dyad alters DNA-histone binding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Reproducible compartmentalization of individual chromosome domains in human CNS cells revealed by in situ hybridization and three-dimensional reconstruction

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Spatially confined folding of chromatin in the interphase nucleus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Changes in 5S rDNA chromatin organization and transcription during heterochromatin establishment in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Distinct regulation of histone H3 methylation at lysines 27 and 9 by CpG methylation in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Conserved role of intragenic DNA methylation in regulating alternative promoters

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Nucleosome organization in the Drosophila genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Architectural roles of multiple chromatin insulators at the human apolipoprotein gene cluster

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Transcription factories are nuclear subcompartments that remain in the absence of transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Two regulatory levels of transcriptional gene silencing in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Visualizing telomere dynamics in living mammalian cells using PNA probes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Lack of bystander activation shows that localization exterior to chromosome territories is not sufficient to up-regulate gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Stable morphology, but dynamic internal reorganisation, of interphase human chromosomes in living cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Compartmentalization of interphase chromosomes observed in simulation and experiment

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

A nuclear matrix/scaffold attachment region co-localizes with the gypsy retrotransposon insulator sequence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Sequencing of a rice centromere uncovers active genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Cohesin is required for higher-order chromatin conformation at the imprinted IGF2-H19 locus

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Non-specific interactions are sufficient to explain the position of heterochromatic chromocenters and nucleoli in interphase nuclei.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

A polymer model for large-scale chromatin organization in lower eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Close encounters of the 3C kind: long-range chromatin interactions and transcriptional regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Chromosome territory arrangement and homologous pairing in nuclei of Arabidopsis thaliana are predominantly random except for NOR-bearing chromosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Tandem repetitive transgenes and fluorescent chromatin tags alter local interphase chromosome arrangement in Arabidopsis thaliana.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Epigenetic regulation of repetitive elements is attenuated by prolonged heat stress in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

DNA methylation, nucleosome formation and positioning

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Arabidopsis histone deacetylase HDA6 is required for maintenance of transcriptional gene silencing and determines nuclear organization of rDNA repeats.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Structural differences in centromeric heterochromatin are spatially reconciled on fertilisation in the mouse zygote.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

A strand-specific burst in transcription of pericentric satellites is required for chromocenter formation and early mouse development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

EM measurements define the dimensions of the "30-nm" chromatin fiber: evidence for a compact, interdigitated structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

30 nm chromatin fibre decompaction requires both H4-K16 acetylation and linker histone eviction

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Nucleosome repeat length and linker histone stoichiometry determine chromatin fiber structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Genome organization and function: a view from yeast and Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

X-ray structure of a tetranucleosome and its implications for the chromatin fibre

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Dynamic regulation of nucleosome positioning in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

There is an upper limit of chromosome size for normal development of an organism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Chromosome painting in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

What controls nucleosome positions?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

A genomic code for nucleosome positioning

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Histone H4-K16 acetylation controls chromatin structure and protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Differences in centromere positioning of cycling and postmitotic human cell types

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Nuclear architecture of rod photoreceptor cells adapts to vision in mammalian evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

FISH applications for genomics and plant breeding strategies in tomato and other solanaceous crops

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Large-scale dissociation and sequential reassembly of pericentric heterochromatin in dedifferentiated Arabidopsis cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Light-regulated large-scale reorganization of chromatin during the floral transition in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Phytochrome B and histone deacetylase 6 control light-induced chromatin compaction in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Stress-induced activation of heterochromatic transcription.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

PcG proteins, DNA methylation, and gene repression by chromatin looping.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Looping and interaction between hypersensitive sites in the active beta-globin locus

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Direct interaction of Arabidopsis cryptochromes with COP1 in light control development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Cohesin mediates transcriptional insulation by CCCTC-binding factor

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

A relationship between the helical twist of DNA and the ordered positioning of nucleosomes in all eukaryotic cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

An all-atom model of the chromatin fiber containing linker histones reveals a versatile structure tuned by the nucleosomal repeat length

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

A variable topology for the 30-nm chromatin fibre

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

COP1 - from plant photomorphogenesis to mammalian tumorigenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Genome-scale identification of nucleosome positions in S. cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Photoreceptors CRYTOCHROME2 and phytochrome B control chromatin compaction in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Large-scale chromatin de-compaction induced by low light is not accompanied by nucleosomal displacement

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Genome-wide evolutionary analysis of eukaryotic DNA methylation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Conserved Histone Variant H2A.Z Protects Euchromatin from the Ectopic Spread of Silent Heterochromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

Repression of flowering in Arabidopsis requires activation of FLOWERING LOCUS C expression by the histone variant H2A.Z

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04526.X

10.1111/J.1365-313X.2011.04526.X

21 January 2018

Identifiers

DOI

1 reference

24 August 2017

1 reference

PubMed ID

21443619