(Q38007394)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22555938%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

title

Computational approaches to discovering noncoding RNA (English)

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31 January 2020

1

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31 January 2020

Miguel Andrade

series ordinal

3

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31 January 2020

author name string

Enrique M Muro

series ordinal

2

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31 January 2020

publication date

3 May 2012

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Wiley interdisciplinary reviews. RNA

31 January 2020

published in

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31 January 2020

volume

3

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31 January 2020

issue

4

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31 January 2020

page(s)

567-579

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Microbial gene identification using interpolated Markov models

31 January 2020

cites work

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21 January 2018

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21 January 2018

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21 January 2018

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Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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Identification of clustered microRNAs using an ab initio prediction method

21 January 2018

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Identification of hundreds of conserved and nonconserved human microRNAs

21 January 2018

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21 January 2018

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Integration of expressed sequence tag data flanking predicted RNA secondary structures facilitates novel non-coding RNA discovery.

21 January 2018

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MicroRNAs differentially expressed in postnatal aortic development downregulate elastin via 3' UTR and coding-sequence binding sites

21 January 2018

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Bidirectional Transcription and the Regulation of Phage λ Repressor Synthesis

21 January 2018

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21 January 2018

In search of antisense

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Antisense transcripts in the human genome

21 January 2018

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Widespread occurrence of antisense transcription in the human genome

21 January 2018

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RNA-Seq analysis of splicing in Plasmodium falciparum uncovers new splice junctions, alternative splicing and splicing of antisense transcripts

21 January 2018

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Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes

21 January 2018

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Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes

21 January 2018

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Pseudogenes as an alternative source of natural antisense transcripts

21 January 2018

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HMMSplicer: A Tool for Efficient and Sensitive Discovery of Known and Novel Splice Junctions in RNA-Seq Data

21 January 2018

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

21 January 2018

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Explaining differences in saturation levels for Affymetrix GeneChip arrays

21 January 2018

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Correcting log ratios for signal saturation in cDNA microarrays

21 January 2018

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Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering

21 January 2018

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A non-biased framework for the annotation and classification of the non-miRNA small RNA transcriptome

21 January 2018

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Consensus folding of aligned sequences as a new measure for the detection of functional RNAs by comparative genomics

21 January 2018

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21 January 2018

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The miR-106b-25 polycistron, activated by genomic amplification, functions as an oncogene by suppressing p21 and Bim

21 January 2018

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A genome-wide survey for SNPs altering microRNA seed sites identifies functional candidates in GWAS.

21 January 2018

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Non-coding RNAs: regulators of disease

21 January 2018

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Functional microRNA involved in endometriosis.

21 January 2018

1 reference

Two-tiered approach identifies a network of cancer and liver disease-related genes regulated by miR-122.

21 January 2018

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Genomewide characterization of non-polyadenylated RNAs

21 January 2018

1 reference

Efficient 5' cap-dependent RNA purification : use in identifying and studying subsets of RNA.

21 January 2018

1 reference

Ribosomal RNA depletion for massively parallel bacterial RNA-sequencing applications

21 January 2018

1 reference

Comprehensive comparative analysis of strand-specific RNA sequencing methods

21 January 2018

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Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells

21 January 2018

1 reference

CsrB sRNA family: sequestration of RNA-binding regulatory proteins

21 January 2018

1 reference

Probing the structure of RNAIII, the Staphylococcus aureus agr regulatory RNA, and identification of the RNA domain involved in repression of protein A expression

21 January 2018

1 reference

Prospects for riboswitch discovery and analysis

21 January 2018

1 reference

Identification of bacterial small non-coding RNAs: experimental approaches

21 January 2018

1 reference

Experimental approaches for the discovery and characterization of regulatory small RNA.

21 January 2018

1 reference

Experimental approaches to identify non-coding RNAs

21 January 2018

1 reference

Novel small RNA-encoding genes in the intergenic regions of Escherichia coli

21 January 2018

1 reference

Computational prediction of sRNAs and their targets in bacteria.

21 January 2018

1 reference

Assessing computational tools for the discovery of small RNA genes in bacteria

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

1 reference

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21 January 2018

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miRBase: integrating microRNA annotation and deep-sequencing data

21 January 2018

1 reference

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21 January 2018

1 reference

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21 January 2018

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21 January 2018

1 reference

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21 January 2018

1 reference

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21 January 2018

1 reference

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21 January 2018

1 reference

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21 January 2018

1 reference

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles

21 January 2018

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The reality of pervasive transcription

21 January 2018

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Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation

21 January 2018

1 reference

Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray

21 January 2018

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Expression of distinct RNAs from 3' untranslated regions

21 January 2018

1 reference

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

21 January 2018

1 reference

Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes

21 January 2018

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Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends

21 January 2018

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Genome-wide identification of polycomb-associated RNAs by RIP-seq

21 January 2018

1 reference

Total RNA sequencing reveals nascent transcription and widespread co-transcriptional splicing in the human brain

21 January 2018

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21 January 2018

The double life of RNA

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21 January 2018

Identifiers

DOI

10.1002/WRNA.1121

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22555938%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

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