(Q38024637)

27 August 2017

title

Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present (English)

1 reference

27 August 2017

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4

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27 August 2017

Marcus Bantscheff

1

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27 August 2017

Simone Lemeer

series ordinal

2

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27 August 2017

Mikhail M Savitski

series ordinal

3

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27 August 2017

language of work or name

English

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publication date

8 July 2012

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Analytical and Bioanalytical Chemistry

27 August 2017

published in

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27 August 2017

volume

404

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27 August 2017

issue

4

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27 August 2017

page(s)

939-965

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Mass spectrometry-based proteomics

27 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Proteomics: a pragmatic perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Quantitative mass spectrometry in proteomics: a critical review

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Development of multidimensional liquid chromatography and application in proteomic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

The quantitative proteome of a human cell line.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Deep proteome and transcriptome mapping of a human cancer cell line

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

A guided tour of the Trans-Proteomic Pipeline

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Statistics in experimental design, preprocessing, and analysis of proteomics data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

The phosphoproteomics data explosion.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Acetylation goes global: the emergence of acetylation biology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Evaluation of large scale quantitative proteomic assay development using peptide affinity-based mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Mass spectrometry-based proteomics in preclinical drug discovery

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Fractionation of isotopically labeled peptides in quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Analysis of nucleolar protein dynamics reveals the nuclear degradation of ribosomal proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

The turnover kinetics of major histocompatibility complex peptides of human cancer cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Global analysis of cellular protein translation by pulsed SILAC

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Systems-wide proteomic analysis in mammalian cells reveals conserved, functional protein turnover

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Advanced identification of proteins in uncharacterized proteomes by pulsed in vivo stable isotope labeling-based mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Whole cell proteome regulation by microRNAs captured in a pulsed SILAC mass spectrometry approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Systematic identification of the HSP90 candidate regulated proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Super-SILAC mix for quantitative proteomics of human tumor tissue

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Quantitative proteomics by metabolic labeling of model organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Absolute SILAC for accurate quantitation of proteins in complex mixtures down to the attomole level.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Tandem Mass Tags: A Novel Quantification Strategy for Comparative Analysis of Complex Protein Mixtures by MS/MS

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Robust and sensitive iTRAQ quantification on an LTQ Orbitrap mass spectrometer

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

iTRAQ reagent-based quantitative proteomic analysis on a linear ion trap mass spectrometer

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Higher-energy C-trap dissociation for peptide modification analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Higher-energy collision-activated dissociation without a dedicated collision cell

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Electron transfer dissociation of iTRAQ labeled peptide ions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Peptide quantification using 8-plex isobaric tags and electron transfer dissociation tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Peptide and protein quantification using iTRAQ with electron transfer dissociation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Addressing accuracy and precision issues in iTRAQ quantitation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Gas-phase purification enables accurate, multiplexed proteome quantification with isobaric tagging

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Multiple reaction monitoring of mTRAQ-labeled peptides enables absolute quantification of endogenous levels of a potential cancer marker in cancerous and normal endometrial tissues

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Stable-isotope dimethyl labeling for quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Quantitation of protein phosphorylation in pregnant rat uteri using stable isotope dimethyl labeling coupled with IMAC.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Triplex protein quantification based on stable isotope labeling by peptide dimethylation applied to cell and tissue lysates

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Multiplex N-terminome analysis of MMP-2 and MMP-9 substrate degradomes by iTRAQ-TAILS quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

A quantitative atlas of mitotic phosphorylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Strong cation exchange-based fractionation of Lys-N-generated peptides facilitates the targeted analysis of post-translational modifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Brain phosphoproteome obtained by a FASP-based method reveals plasma membrane protein topology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Two-dimensional reversed-phase x ion-pair reversed-phase HPLC: an alternative approach to high-resolution peptide separation for shotgun proteome analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Highly robust, automated, and sensitive online TiO2-based phosphoproteomics applied to study endogenous phosphorylation in Drosophila melanogaster.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Large-scale characterization of HeLa cell nuclear phosphoproteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Zwitterionic hydrophilic interaction liquid chromatography (ZIC-HILIC and ZIC-cHILIC) provide high resolution separation and increase sensitivity in proteome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Hydrophilic interaction chromatography reduces the complexity of the phosphoproteome and improves global phosphopeptide isolation and detection

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Optimizing the peak capacity per unit time in one-dimensional and off-line two-dimensional liquid chromatography for the separation of complex peptide samples.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

The effect and potential of using a temperature controlled separation column with ultra-high pressure microcapillary liquid chromatography/tandem mass spectrometry on proteomic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Automated ultra-high-pressure multidimensional protein identification technology (UHP-MudPIT) for improved peptide identification of proteomic samples

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

System-wide perturbation analysis with nearly complete coverage of the yeast proteome by single-shot ultra HPLC runs on a bench top Orbitrap

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Microfluidic chips for mass spectrometry-based proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Chip-Based Enrichment and NanoLC-MS/MS Analysis of Phosphopeptides from Whole Lysates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Multi-dimensional HPLC/MS of the nucleolar proteome using HPLC-chip/MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Electron transfer dissociation mass spectrometry in proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Options and considerations when selecting a quantitative proteomics strategy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Evaluation of a high resolving power time-of-flight mass spectrometer for drug analysis in terms of resolving power and acquisition rate.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Decision tree-driven tandem mass spectrometry for shotgun proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Scoring proteomes with proteotypic peptide probes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Experimental and computational approaches to quantitative proteomics: status quo and outlook

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Precursor acquisition independent from ion count: how to dive deeper into the proteomics ocean.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Proteomics on an Orbitrap benchtop mass spectrometer using all-ion fragmentation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

UPLC/MS(E); a new approach for generating molecular fragment information for biomarker structure elucidation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Deconvolution of mixture spectra from ion-trap data-independent-acquisition tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

XDIA: improving on the label-free data-independent analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

The detection, correlation, and comparison of peptide precursor and product ions from data independent LC-MS with data dependant LC-MS/MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Detecting differential and correlated protein expression in label-free shotgun proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Comparison of label-free methods for quantifying human proteins by shotgun proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Relative, label-free protein quantitation: Spectral counting error statistics from nine replicate MudPIT samples

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Improved LC-MS/MS spectral counting statistics by recovering low-scoring spectra matched to confidently identified peptide sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Significance analysis of spectral count data in label-free shotgun proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Interpretation of shotgun proteomic data: the protein inference problem

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Refinements to label free proteome quantitation: how to deal with peptides shared by multiple proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

A label-free quantification method by MS/MS TIC compared to SILAC and spectral counting in a proteomics screen

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

RIBAR and xRIBAR: Methods for reproducible relative MS/MS-based label-free protein quantification.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Identification and relative quantitation of protein mixtures by enzymatic digestion followed by capillary reversed-phase liquid chromatography-tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Quantitative profiling of proteins in complex mixtures using liquid chromatography and mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Highly efficient peptide separations in proteomics. Part 2: bi- and multidimensional liquid-based separation techniques.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Highly efficient peptide separations in proteomics Part 1. Unidimensional high performance liquid chromatography

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

An analysis of protein abundance suppression in data dependent liquid chromatography and tandem mass spectrometry with tryptic peptide mixtures of five known proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Informatics platform for global proteomic profiling and biomarker discovery using liquid chromatography-tandem mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

A statistical method for assessing peptide identification confidence in accurate mass and time tag proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

VIPER: an advanced software package to support high-throughput LC-MS peptide identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Plasma biomarkers for detecting Hodgkin's lymphoma in HIV patients.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Simultaneous qualitative and quantitative analysis of the Escherichia coli proteome: a sweet tale

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Data-independent liquid chromatography/mass spectrometry (LC/MS(E)) detection and quantification of the secreted Apium graveolens pathogen defense protein mannitol dehydrogenase

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Improving protein and proteome coverage through data-independent multiplexed peptide fragmentation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

TOPP--the OpenMS proteomics pipeline

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

OpenMS and TOPP: open source software for LC-MS data analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

OpenMS - an open-source software framework for mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Quantitative proteomics reveals subset-specific viral recognition in dendritic cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

MapQuant: open-source software for large-scale protein quantification

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Comparative LC-MS: a landscape of peaks and valleys

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Data processing pipelines for comprehensive profiling of proteomics samples by label-free LC-MS for biomarker discovery

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Less label, more free: approaches in label-free quantitative mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

SAINT-MS1: protein-protein interaction scoring using label-free intensity data in affinity purification-mass spectrometry experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Implementation and evaluation of relative and absolute quantification in shotgun proteomics with label-free methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Comprehensive quantitative analysis of central carbon and amino-acid metabolism in Saccharomyces cerevisiae under multiple conditions by targeted proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Multiple reaction monitoring for quantitative biomarker analysis in proteomics and metabolomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Selected reaction monitoring applied to proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Selected reaction monitoring for quantitative proteomics: a tutorial

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Quantifying proteins by mass spectrometry: the selectivity of SRM is only part of the problem

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

21 January 2018

The PeptideAtlas Project

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

PRIDE: a public repository of protein and peptide identifications for the proteomics community

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

PRIDE Inspector: a tool to visualize and validate MS proteomics data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Prediction of high-responding peptides for targeted protein assays by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Computational prediction of proteotypic peptides for quantitative proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

A database of mass spectrometric assays for the yeast proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

mProphet: automated data processing and statistical validation for large-scale SRM experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Free computational resources for designing selected reaction monitoring transitions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

A correlation algorithm for the automated quantitative analysis of shotgun proteomics data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Multiple Reaction Monitoring to Identify Sites of Protein Phosphorylation with High Sensitivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Increased Selectivity, Analytical Precision, and Throughput in Targeted Proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Ensemble modeling for analysis of cell signaling dynamics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Global quantification of mammalian gene expression control

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Stoichiometry and absolute quantification of proteins with mass spectrometry using fluorescent and isotope-labeled concatenated peptide standards.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Determination of protein stoichiometry within protein complexes using absolute quantification and multiple reaction monitoring

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Quantitative interaction proteomics using mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

The absolute quantification strategy: a general procedure for the quantification of proteins and post-translational modifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Multiplexed absolute quantification in proteomics using artificial QCAT proteins of concatenated signature peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

FLEXIQuant: a novel tool for the absolute quantification of proteins, and the simultaneous identification and quantification of potentially modified peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Absolute quantification of the glycolytic pathway in yeast: deployment of a complete QconCAT approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

A Protein Epitope Signature Tag (PrEST) library allows SILAC-based absolute quantification and multiplexed determination of protein copy numbers in cell lines

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

A human protein atlas for normal and cancer tissues based on antibody proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Towards a knowledge-based Human Protein Atlas

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Tandem MS analysis of brain clathrin-coated vesicles reveals their critical involvement in synaptic vesicle recycling

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Cluster analysis of mass spectrometry data reveals a novel component of SAGA

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Large-scale proteomic analysis of the human spliceosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Comparison of two label-free global quantitation methods, APEX and 2D gel electrophoresis, applied to the Shigella dysenteriae proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Comparative evaluation of label-free SINQ normalized spectral index quantitation in the central proteomics facilities pipeline

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Absolute quantification of microbial proteomes at different states by directed mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Estimation of absolute protein quantities of unlabeled samples by selected reaction monitoring mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Heteroatom(isotope)-tagged proteomics via ICP-MS: screening and quantification of proteins and their post-translational modifications.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Elemental mass spectrometry for quantitative proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Metal-coded affinity tag labeling: a demonstration of analytical robustness and suitability for biological applications.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Dual labeling of biomolecules using MeCAT and DOTA derivatives: application to quantitative proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Phosphorus-based absolutely quantified standard peptides for quantitative proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Recombinant isotope labeled and selenium quantified proteins for absolute protein quantification

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Global phosphoproteomics reveals crosstalk between Bcr-Abl and negative feedback mechanisms controlling Src signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Systems-wide analysis of a phosphatase knock-down by quantitative proteomics and phosphoproteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Global, in vivo, and site-specific phosphorylation dynamics in signaling networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Quantitative phosphoproteomics identifies substrates and functional modules of Aurora and Polo-like kinase activities in mitotic cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Catch me if you can: mass spectrometry-based phosphoproteomics and quantification strategies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Quantitative phosphoproteomics studies using stable isotope dimethyl labeling coupled with IMAC-HILIC-nanoLC-MS/MS for estrogen-induced transcriptional regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

High-resolution mapping of prostaglandin E2-dependent signaling networks identifies a constitutively active PKA signaling node in CD8+CD45RO+ T cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

In-depth qualitative and quantitative profiling of tyrosine phosphorylation using a combination of phosphopeptide immunoaffinity purification and stable isotope dimethyl labeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Tyrosine phosphorylation profiling in FGF-2 stimulated human embryonic stem cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Quantitative mitochondrial phosphoproteomics using iTRAQ on an LTQ-Orbitrap with high energy collision dissociation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Quantitative phosphoproteomic analysis of T cell receptor signaling in diabetes prone and resistant mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Phosphoproteomics using iTRAQ.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Integrating titania enrichment, iTRAQ labeling, and Orbitrap CID-HCD for global identification and quantitative analysis of phosphopeptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Characterization of a TiO₂ enrichment method for label-free quantitative phosphoproteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

MSQuant, an open source platform for mass spectrometry-based quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Trypsin cleaves exclusively C-terminal to arginine and lysine residues

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Optimization and use of peptide mass measurement accuracy in shotgun proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Quantitative profile of five murine core proteomes using label-free functional proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

A self-validating quantitative mass spectrometry method for assessing the accuracy of high-content phosphoproteomic experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

iTRAQ underestimation in simple and complex mixtures: "the good, the bad and the ugly".

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Improving protein identification using complementary fragmentation techniques in fourier transform mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Chemoproteomics profiling of HDAC inhibitors reveals selective targeting of HDAC complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

General statistical modeling of data from protein relative expression isobaric tags.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Quantitative chemical proteomics reveals new potential drug targets in head and neck cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Comprehensive comparison of iTRAQ and label-free LC-based quantitative proteomics approaches using two Chlamydomonas reinhardtii strains of interest for biofuels engineering.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Targeted data acquisition for improved reproducibility and robustness of proteomic mass spectrometry assays

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Systematic comparison of label-free, metabolic labeling, and isobaric chemical labeling for quantitative proteomics on LTQ Orbitrap Velos.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Multiple hypothesis testing in proteomics: a strategy for experimental work.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Affinity purification-mass spectrometry. Powerful tools for the characterization of protein complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Proteome survey reveals modularity of the yeast cell machinery

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Functional organization of the yeast proteome by systematic analysis of protein complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Quantitative proteomic analysis of distinct mammalian Mediator complexes using normalized spectral abundance factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Assignment of protein interactions from affinity purification/mass spectrometry data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Evaluation of clustering algorithms for protein complex and protein interaction network assembly.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Analysis of protein complexes through model-based biclustering of label-free quantitative AP-MS data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

SAINT: probabilistic scoring of affinity purification-mass spectrometry data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Inhibition of BET recruitment to chromatin as an effective treatment for MLL-fusion leukaemia

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Targeted proteomic strategy for clinical biomarker discovery

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Processing and classification of protein mass spectra

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Partial least squares: a versatile tool for the analysis of high-dimensional genomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Mass spectrometry-based proteomics turns quantitative

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Modified spectral count index (mSCI) for estimation of protein abundance by protein relative identification possibility (RIPpro): a new proteomic technological parameter

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Protein labeling by iTRAQ: A new tool for quantitative mass spectrometry in proteome research

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Ultra-High-Pressure RPLC Hyphenated to an LTQ-Orbitrap Velos Reveals a Linear Relation between Peak Capacity and Number of Identified Peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Statistical Analysis of Membrane Proteome Expression Changes inSaccharomycescerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Utility of Accurate Mass Tags for Proteome-Wide Protein Identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Differential Label-free Quantitative Proteomic Analysis ofShewanella oneidensisCultured under Aerobic and Suboxic Conditions by Accurate Mass and Time Tag Approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Stoichiometry Determination of the MP1−p14 Complex Using a Novel and Cost-Efficient Method To Produce an Equimolar Mixture of Standard Peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Isotope-labeled Protein Standards

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

Development of a Protein Standard Absolute Quantification (PSAQ™) assay for the quantification of Staphylococcus aureus enterotoxin A in serum

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6203-4

10.1007/S00216-012-6203-4

21 January 2018

Identifiers

DOI

1 reference

27 August 2017

1 reference