(Q38028384)

27 August 2017

title

Analysing signalling networks by mass spectrometry (English)

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27 August 2017

Claus Jørgensen

1

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27 August 2017

Marie Locard-Paulet

series ordinal

2

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27 August 2017

publication date

22 July 2012

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27 August 2017

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27 August 2017

volume

43

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27 August 2017

issue

3

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27 August 2017

page(s)

1061-1074

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describes a project that uses

27 August 2017

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The molecular architecture of the nuclear pore complex

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Determining the architectures of macromolecular assemblies

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

A multidimensional chromatography technology for in-depth phosphoproteome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

The human plasma proteome: history, character, and diagnostic prospects

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

The impact of microRNAs on protein output

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Quantitative chemical proteomics reveals mechanisms of action of clinical ABL kinase inhibitors

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

High-throughput mapping of a dynamic signaling network in mammalian cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Large-scale characterization of HeLa cell nuclear phosphoproteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Network organization of the human autophagy system

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

A chemical switch for inhibitor-sensitive alleles of any protein kinase

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Selected reaction monitoring mass spectrometry reveals the dynamics of signaling through the GRB2 adaptor

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Phosphoproteomic analysis reveals interconnected system-wide responses to perturbations of kinases and phosphatases in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Combined use of RNAi and quantitative proteomics to study gene function in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

A global protein kinase and phosphatase interaction network in yeast.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Large-scale discovery of ERK2 substrates identifies ERK-mediated transcriptional regulation by ETV3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Lysine acetylation targets protein complexes and co-regulates major cellular functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Ultrasensitive and absolute quantification of the phosphoinositide 3-kinase/Akt signal transduction pathway by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

A quantitative atlas of mitotic phosphorylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Assay development for the determination of phosphorylation stoichiometry using multiple reaction monitoring methods with and without phosphatase treatment: application to breast cancer signaling pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Options and considerations when selecting a quantitative proteomics strategy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Quantitative mass spectrometry identifies insulin signaling targets in C. elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Large-scale mapping of human protein-protein interactions by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

A systematic interaction map of validated kinase inhibitors with Ser/Thr kinases

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Proteome survey reveals modularity of the yeast cell machinery

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Proteomic changes resulting from gene copy number variations in cancer cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Analysis of protein complexes using mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Evolutionary constraints of phosphorylation in eukaryotes, prokaryotes, and mitochondria

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Signaling networks assembled by oncogenic EGFR and c-Met

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

A protein complex network of Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

The mTOR-regulated phosphoproteome reveals a mechanism of mTORC1-mediated inhibition of growth factor signaling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Quantitative analysis of EGFRvIII cellular signaling networks reveals a combinatorial therapeutic strategy for glioblastoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Transforming gene product of Rous sarcoma virus phosphorylates tyrosine

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

A tissue-specific atlas of mouse protein phosphorylation and expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Interpreting the protein language using proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Measurement of protein phosphorylation stoichiometry by selected reaction monitoring mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Rigorous determination of the stoichiometry of protein phosphorylation using mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Cell-specific information processing in segregating populations of Eph receptor ephrin-expressing cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

A quantitative analysis of kinase inhibitor selectivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Systematic and quantitative assessment of the ubiquitin-modified proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Mitotic substrates of the kinase aurora with roles in chromatin regulation identified through quantitative phosphoproteomics of fission yeast.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Mechanism of divergent growth factor effects in mesenchymal stem cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Sensitive multiplexed analysis of kinase activities and activity-based kinase identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Proteome organization in a genome-reduced bacterium

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Systematic Discovery of In Vivo Phosphorylation Networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Selected reaction monitoring-mass spectrometric immunoassay responsive to parathyroid hormone and related variants

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Mass spectrometric discovery and selective reaction monitoring (SRM) of putative protein biomarker candidates in first trimester Trisomy 21 maternal serum

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Analysis of the human endogenous coregulator complexome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Linear Motif Atlas for Phosphorylation-Dependent Signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Deciphering protein kinase specificity through large-scale analysis of yeast phosphorylation site motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Akt-RSK-S6 kinase signaling networks activated by oncogenic receptor tyrosine kinases

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Accurate quantitation of protein expression and site-specific phosphorylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Global, in vivo, and site-specific phosphorylation dynamics in signaling networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Large-scale proteomics analysis of the human kinome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Analysis of receptor signaling pathways by mass spectrometry: identification of vav-2 as a substrate of the epidermal and platelet-derived growth factor receptors

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Functional interrogation of the kinome using nucleotide acyl phosphates

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

In situ kinase profiling reveals functionally relevant properties of native kinases

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Assembly of Cell Regulatory Systems Through Protein Interaction Domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

A proteomics approach to understanding protein ubiquitination

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

High-throughput generation of selected reaction-monitoring assays for proteins and proteomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Stable isotope labeling by amino acids in cell culture (SILAC) and quantitative comparison of the membrane proteomes of self-renewing and differentiating human embryonic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Trans-SILAC: sorting out the non-cell-autonomous proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Protein biomarker discovery and validation: the long and uncertain path to clinical utility

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Global phosphoproteomics reveals crosstalk between Bcr-Abl and negative feedback mechanisms controlling Src signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Immunoaffinity profiling of tyrosine phosphorylation in cancer cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

An integrated, directed mass spectrometric approach for in-depth characterization of complex peptide mixtures

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Global quantification of mammalian gene expression control

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Cell signaling in space and time: where proteins come together and when they're apart

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Widespread changes in protein synthesis induced by microRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Defining the human deubiquitinating enzyme interaction landscape

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

The ABC's (and XYZ's) of peptide sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Stable isotope-free relative and absolute quantitation of protein phosphorylation stoichiometry by MS

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Different phosphorylation states of the anaphase promoting complex in response to antimitotic drugs: a quantitative proteomic analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Profiling of UV-induced ATM/ATR signaling pathways.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

The SILAC fly allows for accurate protein quantification in vivo.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Comparative analysis reveals conserved protein phosphorylation networks implicated in multiple diseases

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

An in vivo map of the yeast protein interactome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

SIMAC (sequential elution from IMAC), a phosphoproteomics strategy for the rapid separation of monophosphorylated from multiply phosphorylated peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Phosphorylation dynamics during early differentiation of human embryonic stem cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Protein interaction mapping in C. elegans using proteins involved in vulval development

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Mutant proteins as cancer-specific biomarkers

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Quantitative interaction proteomics using mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Mapping protein post-translational modifications with mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

A large-scale method to measure absolute protein phosphorylation stoichiometries

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Phosphotyrosine-binding domains in signal transduction

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

A site-specific, multiplexed kinase activity assay using stable-isotope dilution and high-resolution mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Phosphoproteomic analysis identifies Grb10 as an mTORC1 substrate that negatively regulates insulin signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Highly Efficient Phosphopeptide Enrichment by Calcium Phosphate Precipitation Combined with Subsequent IMAC Enrichment

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Reproducible isolation of distinct, overlapping segments of the phosphoproteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Selective Isolation at the Femtomole Level of Phosphopeptides from Proteolytic Digests Using 2D-NanoLC-ESI-MS/MS and Titanium Oxide Precolumns

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Platform for Establishing Interlaboratory Reproducibility of Selected Reaction Monitoring-Based Mass Spectrometry Peptide Assays

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-012-1293-Z

10.1007/S00726-012-1293-Z

21 January 2018

Identifiers

DOI

1 reference

27 August 2017

1 reference