(Q38058250)

27 August 2017

title

Cis-acting noncoding RNAs: friends and foes (English)

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27 August 2017

2

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27 August 2017

Sònia Guil

1

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27 August 2017

language of work or name

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1 November 2012

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Nature Structural & Molecular Biology

27 August 2017

published in

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27 August 2017

volume

19

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27 August 2017

issue

11

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27 August 2017

page(s)

1068-1075

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Genome-wide transcription and the implications for genomic organization

27 August 2017

cites work

1 reference

The reality of pervasive transcription

31 March 2020

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Most "dark matter" transcripts are associated with known genes

31 March 2020

1 reference

Large non-coding RNAs: missing links in cancer?

31 March 2020

1 reference

Long noncoding RNAs and human disease

31 March 2020

1 reference

RNA is an integral component of chromatin that contributes to its structural organization

31 March 2020

1 reference

The silence RNA keeps: cis mechanisms of RNA mediated epigenetic silencing in mammals

31 March 2020

1 reference

The emerging role of RNA in the regulation of gene transcription in human cells

31 March 2020

1 reference

Regulation of chromatin structure by long noncoding RNAs: focus on natural antisense transcripts

31 March 2020

1 reference

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

31 March 2020

1 reference

The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin

31 March 2020

1 reference

Genomic imprinting: a mammalian epigenetic discovery model

31 March 2020

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Regulation of imprinting in clusters: noncoding RNAs versus insulators

31 March 2020

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Genomic imprinting: the emergence of an epigenetic paradigm.

31 March 2020

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Gracefully ageing at 50, X-chromosome inactivation becomes a paradigm for RNA and chromatin control

31 March 2020

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Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript

31 March 2020

1 reference

Promoter-associated RNA is required for RNA-directed transcriptional gene silencing in human cells

31 March 2020

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Widespread bidirectional promoters are the major source of cryptic transcripts in yeast

31 March 2020

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Bidirectional promoters generate pervasive transcription in yeast

31 March 2020

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Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

31 March 2020

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Divergent transcription from active promoters

31 March 2020

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Antisense RNA polymerase II divergent transcripts are P-TEFb dependent and substrates for the RNA exosome

31 March 2020

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Short RNAs are transcribed from repressed polycomb target genes and interact with polycomb repressive complex-2.

31 March 2020

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Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription

31 March 2020

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The nucleolar remodeling complex NoRC mediates heterochromatin formation and silencing of ribosomal gene transcription

31 March 2020

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The chromatin remodeling complex NoRC targets HDAC1 to the ribosomal gene promoter and represses RNA polymerase I transcription

31 March 2020

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Molecular mechanisms mediating methylation-dependent silencing of ribosomal gene transcription

31 March 2020

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The PHD finger/bromodomain of NoRC interacts with acetylated histone H4K16 and is sufficient for rDNA silencing

31 March 2020

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Interaction of noncoding RNA with the rDNA promoter mediates recruitment of DNMT3b and silencing of rRNA genes

31 March 2020

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R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters

31 March 2020

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Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

31 March 2020

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Histone modifications at human enhancers reflect global cell-type-specific gene expression

31 March 2020

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ChIP-seq accurately predicts tissue-specific activity of enhancers

31 March 2020

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Widespread transcription at neuronal activity-regulated enhancers

31 March 2020

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Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA

31 March 2020

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Long noncoding RNAs with enhancer-like function in human cells

31 March 2020

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The Snail genes as inducers of cell movement and survival: implications in development and cancer.

31 March 2020

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Transcription of the HS2 enhancer toward a cis-linked gene is independent of the orientation, position, and distance of the enhancer relative to the gene

31 March 2020

1 reference

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

31 March 2020

1 reference

Antisense transcription in the mammalian transcriptome

31 March 2020

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The transcriptional landscape of the mammalian genome

31 March 2020

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Sense-antisense pairs in mammals: functional and evolutionary considerations

31 March 2020

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RNA regulation: a new genetics?

31 March 2020

1 reference

31 March 2020

In search of antisense

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Characterization of a widely expressed gene (LUC7-LIKE; LUC7L) defining the centromeric boundary of the human alpha-globin domain

31 March 2020

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Transcription of antisense RNA leading to gene silencing and methylation as a novel cause of human genetic disease

31 March 2020

1 reference

CBX7 controls the growth of normal and tumor-derived prostate cells by repressing the Ink4a/Arf locus.

31 March 2020

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Regulation of the INK4b-ARF-INK4a tumour suppressor locus: all for one or one for all.

31 March 2020

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Polycomb CBX7 has a unifying role in cellular lifespan

31 March 2020

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Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA

31 March 2020

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Characterization of a germ-line deletion, including the entire INK4/ARF locus, in a melanoma-neural system tumor family: identification of ANRIL, an antisense noncoding RNA whose expression coclusters with ARF.

31 March 2020

1 reference

Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by polycomb CBX7 in transcriptional silencing of INK4a

31 March 2020

1 reference

Long non-coding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15(INK4B) tumor suppressor gene

31 March 2020

1 reference

Genome-wide association study identifies three loci associated with melanoma risk

31 March 2020

1 reference

Role of noncoding RNA ANRIL in genesis of plexiform neurofibromas in neurofibromatosis type 1.

31 March 2020

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Chromosome 9p21 SNPs Associated with Multiple Disease Phenotypes Correlate with ANRIL Expression

31 March 2020

1 reference

Bidirectional transcription directs both transcriptional gene activation and suppression in human cells

31 March 2020

1 reference

CTCF regulates ataxin-7 expression through promotion of a convergently transcribed, antisense noncoding RNA.

31 March 2020

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Inhibition of natural antisense transcripts in vivo results in gene-specific transcriptional upregulation.

31 March 2020

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Characterization of the RNA content of chromatin

31 March 2020

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N-myc mRNA forms an RNA-RNA duplex with endogenous antisense transcripts

31 March 2020

1 reference

Expression of the thyroid hormone receptor gene, erbAalpha, in B lymphocytes: alternative mRNA processing is independent of differentiation but correlates with antisense RNA levels.

31 March 2020

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Identification and characterization of a novel gene Saf transcribed from the opposite strand of Fas.

31 March 2020

1 reference

Natural antisense transcript of natriuretic peptide precursor A (NPPA): structural organization and modulation of NPPA expression

31 March 2020

1 reference

Control of alternative splicing through siRNA-mediated transcriptional gene silencing.

31 March 2020

1 reference

Extensive relationship between antisense transcription and alternative splicing in the human genome.

31 March 2020

1 reference

A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition

31 March 2020

1 reference

Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase

31 March 2020

1 reference

Evidence for natural antisense transcript-mediated inhibition of microRNA function

31 March 2020

1 reference

Bidirectional regulation between WDR83 and its natural antisense transcript DHPS in gastric cancer

31 March 2020

1 reference

Conserved non-genic sequences - an unexpected feature of mammalian genomes

31 March 2020

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Conserved tissue expression signatures of intronic noncoding RNAs transcribed from human and mouse loci

31 March 2020

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Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription

31 March 2020

1 reference

Biogenic mechanisms and utilization of small RNAs derived from human protein-coding genes

31 March 2020

1 reference

Intronic RNAs mediate EZH2 regulation of epigenetic targets

31 March 2020

1 reference

Molecular biology. Chromatin higher order folding--wrapping up transcription

31 March 2020

1 reference

Gene regulation through nuclear organization.

31 March 2020

1 reference

Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions

31 March 2020

1 reference

Gene regulation in the third dimension

31 March 2020

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ncRNA- and Pc2 methylation-dependent gene relocation between nuclear structures mediates gene activation programs

31 March 2020

1 reference

Mediator and cohesin connect gene expression and chromatin architecture

31 March 2020

1 reference

Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus

31 March 2020

1 reference

Cohesin is required for higher-order chromatin conformation at the imprinted IGF2-H19 locus

31 March 2020

1 reference

A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

31 March 2020

1 reference

The noncoding RNA Mistral activates Hoxa6 and Hoxa7 expression and stem cell differentiation by recruiting MLL1 to chromatin

31 March 2020

1 reference

A long ncRNA links copy number variation to a polycomb/trithorax epigenetic switch in FSHD muscular dystrophy

31 March 2020

1 reference

Hypomethylation of D4Z4 in 4q-linked and non-4q-linked facioscapulohumeral muscular dystrophy

31 March 2020

1 reference

Testing the position-effect variegation hypothesis for facioscapulohumeral muscular dystrophy by analysis of histone modification and gene expression in subtelomeric 4q

31 March 2020

1 reference

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

31 March 2020

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Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

31 March 2020

1 reference

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

31 March 2020

1 reference

Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs

31 March 2020

1 reference

The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator

31 March 2020

1 reference

Shaping the Genome with Non-Coding RNAs

31 March 2020

1 reference

Non-coding RNAs with essential roles in neurodegenerative disorders

31 March 2020

1 reference

Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis

31 March 2020

1 reference

A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response

31 March 2020

1 reference

LincRNA-p21 suppresses target mRNA translation

31 March 2020

1 reference

Role of human noncoding RNAs in the control of tumorigenesis

31 March 2020

1 reference

Noncoding RNA gas5 is a growth arrest- and starvation-associated repressor of the glucocorticoid receptor

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23132386

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Non-coding RNAs as theranostics in human cancers

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23132386

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Long non-coding RNAs: versatile master regulators of gene expression and crucial players in cancer.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23132386

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NSMB.2428

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Dimensions Publication ID

27 August 2017

1010246378

0 references

1 reference