(Q38058756)

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Whence genes in pieces: reconstruction of the exon-intron gene structures of the last eukaryotic common ancestor and other ancestral eukaryotes

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Europe PubMed Central

PubMed publication ID

27 August 2017

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Whence genes in pieces: reconstruction of the exon-intron gene structures of the last eukaryotic common ancestor and other ancestral eukaryotes (English)

1 reference

Europe PubMed Central

PubMed publication ID

27 August 2017

Igor B. Rogozin

object named as

Igor B Rogozin

3

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1

object named as

Eugene V Koonin

1 reference

Europe PubMed Central

PubMed publication ID

27 August 2017

author name string

Miklos Csuros

2

1 reference

Europe PubMed Central

PubMed publication ID

27 August 2017

publication date

8 November 2012

1 reference

Europe PubMed Central

PubMed publication ID

27 August 2017

Wiley interdisciplinary reviews. RNA

1 reference

Europe PubMed Central

PubMed publication ID

27 August 2017

4

1 reference

Europe PubMed Central

PubMed publication ID

27 August 2017

1

1 reference

Europe PubMed Central

PubMed publication ID

27 August 2017

93-105

1 reference

Europe PubMed Central

PubMed publication ID

27 August 2017

Why genes in pieces?

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Pre-mRNA splicing: awash in a sea of proteins

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

The spliceosome: the most complex macromolecular machine in the cell?

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

On the ancient nature of introns

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

The recent origins of spliceosomal introns revisited

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

The evolution of spliceosomal introns

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Testing the exon theory of genes: the evidence from protein structure

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Intron "sliding" and the diversity of intron positions

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

The origin of introns and their role in eukaryogenesis: a compromise solution to the introns-early versus introns-late debate?

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

The path from the RNA world.

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

An overview of the introns-first theory

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

A spliceosomal intron in Giardia lamblia

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Eukaryotic evolution: early origin of canonical introns.

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

The Genome of Naegleria gruberi Illuminates Early Eukaryotic Versatility

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Nucleomorph genome of Hemiselmis andersenii reveals complete intron loss and compaction as a driver of protein structure and function

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Complex spliceosomal organization ancestral to extant eukaryotes

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Who's on first? The U1 snRNP-5' splice site interaction and splicing

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

The U1 snRNP protein U1C recognizes the 5' splice site in the absence of base pairing

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Comparative analysis detects dependencies among the 5' splice-site positions

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

A novel role for a U5 snRNP protein in 3' splice site selection.

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Evidence that U5 snRNP recognizes the 3' splice site for catalytic step II in mammals

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Proto-splice site model of intron origin.

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Evolutionary convergence on highly-conserved 3' intron structures in intron-poor eukaryotes and insights into the ancestral eukaryotic genome

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Molecular evolution of eukaryotic genomes: hemiascomycetous yeast spliceosomal introns

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Analysis of donor splice sites in different eukaryotic organisms

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Intron evolution as a population-genetic process

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

The origins of genome complexity

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Coevolution of genomic intron number and splice sites

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Complex selection on 5' splice sites in intron-rich organisms

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Origin and evolution of spliceosomal introns

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

A detailed history of intron-rich eukaryotic ancestors inferred from a global survey of 100 complete genomes

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Lineage-specific loss and divergence of functionally linked genes in eukaryotes

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Genomic survey of the non-cultivatable opportunistic human pathogen, Enterocytozoon bieneusi

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Constrained intron structures in a microsporidian

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

An ancient spliceosomal intron in the ribosomal protein L7a gene (Rpl7a) of Giardia lamblia

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Seven newly discovered intron positions in the triose-phosphate isomerase gene: evidence for the introns-late theory

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Exon/intron structure of aldehyde dehydrogenase genes supports the "introns-late" theory.

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Toward a resolution of the introns early/late debate: only phase zero introns are correlated with the structure of ancient proteins

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Where do introns come from?

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Large-scale comparison of intron positions among animal, plant, and fungal genes

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Molecular evolution: recent cases of spliceosomal intron gain?

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

The evolutionary gain of spliceosomal introns: sequence and phase preferences

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Conservation versus parallel gains in intron evolution

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Complex early genes

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Analysis of evolution of exon-intron structure of eukaryotic genes

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

New maximum likelihood estimators for eukaryotic intron evolution

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Three distinct modes of intron dynamics in the evolution of eukaryotes

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

In search of lost introns

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Malin: maximum likelihood analysis of intron evolution in eukaryotes

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Vertebrate-type intron-rich genes in the marine annelid Platynereis dumerilii

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Extremely intron-rich genes in the alveolate ancestors inferred with a flexible maximum-likelihood approach

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Evolutionary dynamics of introns in plastid-derived genes in plants: saturation nearly reached but slow intron gain continues

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Evolution of spliceosomal introns following endosymbiotic gene transfer

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

What Nematode genomes tell us about the importance of horizontal gene transfers in the evolutionary history of animals

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Horizontal gene transfer in nematodes: a catalyst for plant parasitism?

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Horizontal gene transfer of microbial cellulases into nematode genomes is associated with functional assimilation and gene turnover

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Protein diversity from alternative splicing: a challenge for bioinformatics and post-genome biology

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Increase of functional diversity by alternative splicing

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Assessing the impact of alternative splicing on domain interactions in the human proteome

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Alternative splicing and evolution: diversification, exon definition and function

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

EST comparison indicates 38% of human mRNAs contain possible alternative splice forms.

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

ISIS, the intron information system, reveals the high frequency of alternative splicing in the human genome

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Assessing the contribution of alternative splicing to proteome diversity in Arabidopsis thaliana using proteomics data

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Comparative genomics and evolution of alternative splicing: the pessimists' science.

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Alternative splicing: current perspectives

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Functional and evolutionary analysis of alternatively spliced genes is consistent with an early eukaryotic origin of alternative splicing

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

How did alternative splicing evolve?

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

A reappraisal of non-consensus mRNA splice sites

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Conserved sequences in a class of rare eukaryotic nuclear introns with non-consensus splice sites

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Terminal intron dinucleotide sequences do not distinguish between U2- and U12-dependent introns

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Evolutionary fates and origins of U12-type introns.

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

An early evolutionary origin for the minor spliceosome

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Computational screen for spliceosomal RNA genes aids in defining the phylogenetic distribution of major and minor spliceosomal components

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Evolutionary dynamics of U12-type spliceosomal introns

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

The splicing of U12-type introns can be a rate-limiting step in gene expression

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Splicing double: insights from the second spliceosome

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

U12 intron positions are more strongly conserved between animals and plants than U2 intron positions

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Primordial spliceosomal introns were probably U2-type

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

A glimpse of a putative pre-intron phase of eukaryotic evolution

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Prevalence of intron gain over intron loss in the evolution of paralogous gene families

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Ancestral paralogs and pseudoparalogs and their role in the emergence of the eukaryotic cell

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Intron dynamics in ribosomal protein genes

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Intron distribution in ancient paralogs supports random insertion and not random loss

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Introns and the origin of nucleus-cytosol compartmentalization

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Intron-dominated genomes of early ancestors of eukaryotes

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

A structural analysis of the group II intron active site and implications for the spliceosome

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Genes in pieces: were they ever together?

1 reference

https://api.crossref.org/works/10.1002%2FWRNA.1143

21 January 2018

Identifiers

10.1002/WRNA.1143

1 reference

Europe PubMed Central

PubMed publication ID

27 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

27 August 2017

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