(Q38085601)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23450686%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

title

Making ends meet: coordination between RNA 3'-end processing and transcription initiation (English)

1 reference

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24 February 2020

2

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24 February 2020

Søren Lykke-Andersen

series ordinal

3

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24 February 2020

author name string

Pia K Andersen

series ordinal

1

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24 February 2020

language of work or name

1 reference

28 February 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23450686%20AND%20SRC:MED&resulttype=core&format=json

Wiley interdisciplinary reviews. RNA

24 February 2020

published in

1 reference

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24 February 2020

volume

4

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24 February 2020

issue

3

1 reference

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24 February 2020

page(s)

233-246

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Conservation between the RNA polymerase I, II, and III transcription initiation machineries

24 February 2020

cites work

1 reference

Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing

21 January 2018

1 reference

Unravelling the means to an end: RNA polymerase II transcription termination.

21 January 2018

1 reference

Ending the message: poly(A) signals then and now

21 January 2018

1 reference

Transcription termination by nuclear RNA polymerases

21 January 2018

1 reference

Promoter-proximal polyadenylation sites reduce transcription activity.

21 January 2018

1 reference

A role for the CPF 3'-end processing machinery in RNAP II-dependent gene looping

21 January 2018

1 reference

Crosstalk between mRNA 3' end processing and transcription initiation

21 January 2018

1 reference

Gene loops juxtapose promoters and terminators in yeast

21 January 2018

1 reference

Gene loops function to maintain transcriptional memory through interaction with the nuclear pore complex

21 January 2018

1 reference

Gene loops enhance transcriptional directionality

21 January 2018

1 reference

Intranuclear distribution and local dynamics of RNA polymerase II during transcription activation.

21 January 2018

1 reference

Structure and basal transcription complex of RNA polymerase II core promoters in the mammalian genome: an overview

21 January 2018

1 reference

Genome-wide analysis of mammalian promoter architecture and evolution

21 January 2018

1 reference

The metazoan Mediator co-activator complex as an integrative hub for transcriptional regulation

21 January 2018

1 reference

Structure and function of RNA polymerase II.

21 January 2018

1 reference

Defining mechanisms that regulate RNA polymerase II transcription in vivo

21 January 2018

1 reference

The basal initiation machinery: beyond the general transcription factors

21 January 2018

1 reference

Functional interaction of yeast pre-mRNA 3' end processing factors with RNA polymerase II.

21 January 2018

1 reference

Transitions in RNA polymerase II elongation complexes at the 3' ends of genes

21 January 2018

1 reference

CTD-dependent dismantling of the RNA polymerase II elongation complex by the pre-mRNA 3'-end processing factor, Pcf11.

21 January 2018

1 reference

Pcf11 is a termination factor in Drosophila that dismantles the elongation complex by bridging the CTD of RNA polymerase II to the nascent transcript

21 January 2018

1 reference

Human 5' --> 3' exonuclease Xrn2 promotes transcription termination at co-transcriptional cleavage sites

21 January 2018

1 reference

The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II.

21 January 2018

1 reference

Pause sites promote transcriptional termination of mammalian RNA polymerase II

21 January 2018

1 reference

Human senataxin resolves RNA/DNA hybrids formed at transcriptional pause sites to promote Xrn2-dependent termination

21 January 2018

1 reference

Yeast Sen1 helicase protects the genome from transcription-associated instability.

21 January 2018

1 reference

The two steps of poly(A)-dependent termination, pausing and release, can be uncoupled by truncation of the RNA polymerase II carboxyl-terminal repeat domain

21 January 2018

1 reference

The poly(A)-dependent transcriptional pause is mediated by CPSF acting on the body of the polymerase

21 January 2018

1 reference

Poly(A) signal-dependent degradation of unprocessed nascent transcripts accompanies poly(A) signal-dependent transcriptional pausing in vitro

21 January 2018

1 reference

The role of Rat1 in coupling mRNA 3'-end processing to transcription termination: implications for a unified allosteric-torpedo model

21 January 2018

1 reference

Progression through the RNA polymerase II CTD cycle

21 January 2018

1 reference

Updating the RNA polymerase CTD code: adding gene-specific layers

21 January 2018

1 reference

Dynamic phosphorylation patterns of RNA polymerase II CTD during transcription

21 January 2018

1 reference

The RNA polymerase II CTD coordinates transcription and RNA processing.

21 January 2018

1 reference

CTD tyrosine phosphorylation impairs termination factor recruitment to RNA polymerase II.

21 January 2018

1 reference

Serine-7 of the RNA polymerase II CTD is specifically required for snRNA gene expression

21 January 2018

1 reference

The integrator complex recognizes a new double mark on the RNA polymerase II carboxyl-terminal domain

21 January 2018

1 reference

Ser7 phosphorylation of the CTD recruits the RPAP2 Ser5 phosphatase to snRNA genes

21 January 2018

1 reference

Threonine-4 of mammalian RNA polymerase II CTD is targeted by Polo-like kinase 3 and required for transcriptional elongation

21 January 2018

1 reference

RNAP II CTD phosphorylated on threonine-4 is required for histone mRNA 3' end processing

21 January 2018

1 reference

Gene-specific RNA polymerase II phosphorylation and the CTD code

21 January 2018

1 reference

Uniform transitions of the general RNA polymerase II transcription complex

21 January 2018

1 reference

RNA polymerase II pausing downstream of core histone genes is different from genes producing polyadenylated transcripts

21 January 2018

1 reference

Ssu72 phosphatase-dependent erasure of phospho-Ser7 marks on the RNA polymerase II C-terminal domain is essential for viability and transcription termination.

21 January 2018

1 reference

RNA polymerase II pauses and associates with pre-mRNA processing factors at both ends of genes.

21 January 2018

1 reference

Fcp1 dephosphorylation of the RNA polymerase II C-terminal domain is required for efficient transcription of heat shock genes

21 January 2018

1 reference

Evidence for a mediator cycle at the initiation of transcription.

21 January 2018

1 reference

Transcriptional termination in the Balbiani ring 1 gene is closely coupled to 3'-end formation and excision of the 3'-terminal intron

21 January 2018

1 reference

The transcriptional cycle of HIV-1 in real-time and live cells.

21 January 2018

1 reference

Molecular dissection of mammalian RNA polymerase II transcriptional termination

21 January 2018

1 reference

Spliceosome assembly is coupled to RNA polymerase II dynamics at the 3' end of human genes

21 January 2018

1 reference

Polyadenylation releases mRNA from RNA polymerase II in a process that is licensed by splicing

21 January 2018

1 reference

Expression of human snRNA genes from beginning to end.

21 January 2018

1 reference

The regulation of histone synthesis in the cell cycle

21 January 2018

1 reference

Multiple independent evolutionary solutions to core histone gene regulation

21 January 2018

1 reference

The general transcription factors IIA, IIB, IIF, and IIE are required for RNA polymerase II transcription from the human U1 small nuclear RNA promoter

21 January 2018

1 reference

A novel TBP-TAF complex on RNA polymerase II-transcribed snRNA genes

21 January 2018

1 reference

Patterns of variant polyadenylation signal usage in human genes

21 January 2018

1 reference

A large-scale analysis of mRNA polyadenylation of human and mouse genes

21 January 2018

1 reference

Point mutations in AAUAAA and the poly (A) addition site: effects on the accuracy and efficiency of cleavage and polyadenylation in vitro

21 January 2018

1 reference

Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation

21 January 2018

1 reference

Protein factors in pre-mRNA 3'-end processing.

21 January 2018

1 reference

Molecular architecture of the human pre-mRNA 3' processing complex

21 January 2018

1 reference

Four factors are required for 3'-end cleavage of pre-mRNAs

21 January 2018

1 reference

Evidence that polyadenylation factor CPSF-73 is the mRNA 3' processing endonuclease.

21 January 2018

1 reference

RNA recognition by the human polyadenylation factor CstF

21 January 2018

1 reference

Genome-wide analysis of pre-mRNA 3' end processing reveals a decisive role of human cleavage factor I in the regulation of 3' UTR length.

21 January 2018

1 reference

Stimulation of poly(A) polymerase through a direct interaction with the nuclear poly(A) binding protein allosterically regulated by RNA.

21 January 2018

1 reference

Poly(A) tail length is controlled by the nuclear poly(A)-binding protein regulating the interaction between poly(A) polymerase and the cleavage and polyadenylation specificity factor

21 January 2018

1 reference

Phosphorylation of TFIIB links transcription initiation and termination.

21 January 2018

1 reference

Transcription factor TFIID recruits factor CPSF for formation of 3' end of mRNA

21 January 2018

1 reference

Evolutionarily conserved interaction between CstF-64 and PC4 links transcription, polyadenylation, and termination

21 January 2018

1 reference

The C-terminal domain of RNA polymerase II couples mRNA processing to transcription

21 January 2018

1 reference

Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution

21 January 2018

1 reference

The interaction of Pcf11 and Clp1 is needed for mRNA 3'-end formation and is modulated by amino acids in the ATP-binding site

21 January 2018

1 reference

Independent functions of yeast Pcf11p in pre-mRNA 3' end processing and in transcription termination

21 January 2018

1 reference

Recognition of RNA polymerase II carboxy-terminal domain by 3'-RNA-processing factors

21 January 2018

1 reference

The human and mouse replication-dependent histone genes

21 January 2018

1 reference

Histone mRNA expression: multiple levels of cell cycle regulation and important developmental consequences

21 January 2018

1 reference

The control of histone gene expression.

21 January 2018

1 reference

An intact histone 3'-processing site is required for transcription termination in a mouse histone H2a gene

21 January 2018

1 reference

Cotranscriptional processing of Drosophila histone mRNAs.

21 January 2018

1 reference

Studies of the 5' exonuclease and endonuclease activities of CPSF-73 in histone pre-mRNA processing

21 January 2018

1 reference

Symplekin and multiple other polyadenylation factors participate in 3'-end maturation of histone mRNAs

21 January 2018

1 reference

A genome-wide RNA interference screen reveals that variant histones are necessary for replication-dependent histone pre-mRNA processing.

21 January 2018

1 reference

Binding of human SLBP on the 3'-UTR of histone precursor H4-12 mRNA induces structural rearrangements that enable U7 snRNA anchoring

21 January 2018

1 reference

A novel zinc finger protein is associated with U7 snRNP and interacts with the stem-loop binding protein in the histone pre-mRNP to stimulate 3'-end processing

21 January 2018

1 reference

U7 snRNP-specific Lsm11 protein: dual binding contacts with the 100 kDa zinc finger processing factor (ZFP100) and a ZFP100-independent function in histone RNA 3' end processing

21 January 2018

1 reference

Conserved zinc fingers mediate multiple functions of ZFP100, a U7snRNP associated protein

21 January 2018

1 reference

FLASH, a proapoptotic protein involved in activation of caspase-8, is essential for 3' end processing of histone pre-mRNAs

21 January 2018

1 reference

FLASH is required for histone transcription and S-phase progression

21 January 2018

1 reference

Deciphering the RNA polymerase II CTD code in fission yeast

21 January 2018

1 reference

CDK9 directs H2B monoubiquitination and controls replication-dependent histone mRNA 3'-end processing

21 January 2018

1 reference

P-TEFb is not an essential elongation factor for the intronless human U2 snRNA and histone H2b genes

21 January 2018

1 reference

Transcriptional regulation of human small nuclear RNA genes

21 January 2018

1 reference

Targeting TBP to a non-TATA box cis-regulatory element: a TBP-containing complex activates transcription from snRNA promoters through the PSE

21 January 2018

1 reference

Integrator, a multiprotein mediator of small nuclear RNA processing, associates with the C-terminal repeat of RNA polymerase II

21 January 2018

1 reference

Transcription of the human U2 snRNA genes continues beyond the 3' box in vivo

21 January 2018

1 reference

Transcription boundaries of U1 small nuclear RNA.

21 January 2018

1 reference

The C-terminal domain of pol II and a DRB-sensitive kinase are required for 3' processing of U2 snRNA.

21 January 2018

1 reference

Role of the C-terminal domain of RNA polymerase II in U2 snRNA transcription and 3' processing

21 January 2018

1 reference

The 3' ends of human pre-snRNAs are produced by RNA polymerase II CTD-dependent RNA processing

21 January 2018

1 reference

Increasing the distance between the snRNA promoter and the 3' box decreases the efficiency of snRNA 3'-end formation

21 January 2018

1 reference

3' end formation of U1 snRNA precursors is coupled to transcription from snRNA promoters

21 January 2018

1 reference

RNA-binding protein Nrd1 directs poly(A)-independent 3'-end formation of RNA polymerase II transcripts

21 January 2018

1 reference

Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3.

21 January 2018

1 reference

Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance

21 January 2018

1 reference

Nrd1 interacts with the nuclear exosome for 3' processing of RNA polymerase II transcripts

21 January 2018

1 reference

Repression of gene expression by an exogenous sequence element acting in concert with a heterogeneous nuclear ribonucleoprotein-like protein, Nrd1, and the putative helicase Sen1

21 January 2018

1 reference

Budding yeast RNA polymerases I and II employ parallel mechanisms of transcriptional termination

21 January 2018

1 reference

Genome-wide distribution of yeast RNA polymerase II and its control by Sen1 helicase

21 January 2018

1 reference

Control of pre-mRNA accumulation by the essential yeast protein Nrd1 requires high-affinity transcript binding and a domain implicated in RNA polymerase II association

21 January 2018

1 reference

Identification of cis elements directing termination of yeast nonpolyadenylated snoRNA transcripts

21 January 2018

1 reference

Interaction of yeast RNA-binding proteins Nrd1 and Nab3 with RNA polymerase II terminator elements

21 January 2018

1 reference

Serine phosphorylation and proline isomerization in RNAP II CTD control recruitment of Nrd1

21 January 2018

1 reference

The Nrd1–Nab3–Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain

21 January 2018

1 reference

Functional interactions between the transcription and mRNA 3′ end processing machineries mediated by Ssu72 and Sub1

21 January 2018

1 reference

Role for the Ssu72 C-terminal domain phosphatase in RNA polymerase II transcription elongation

21 January 2018

1 reference

A transcription-independent role for TFIIB in gene looping.

21 January 2018

1 reference

Dynamic interactions between the promoter and terminator regions of the mammalian BRCA1 gene

21 January 2018

1 reference

Fail-safe transcriptional termination for protein-coding genes in S. cerevisiae.

21 January 2018

1 reference

Functional coupling of last-intron splicing and 3'-end processing to transcription in vitro: the poly(A) signal couples to splicing before committing to cleavage

21 January 2018

1 reference

Direct interactions between subunits of CPSF and the U2 snRNP contribute to the coupling of pre-mRNA 3' end processing and splicing.

21 January 2018

1 reference

3'-box-dependent processing of human pre-U1 snRNA requires a combination of RNA and protein co-factors

21 January 2018

1 reference

An ending is a new beginning: transcription termination supports re-initiation.

21 January 2018

1 reference

The transcription cycle in eukaryotes: from productive initiation to RNA polymerase II recycling

21 January 2018

1 reference

In vivo dynamics of RNA polymerase II transcription.

21 January 2018

1 reference

Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells

21 January 2018

1 reference

A transcription reinitiation intermediate that is stabilized by activator

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1002/WRNA.1156

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23450686%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

1 reference