(Q38104830)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23651551%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

title

Communication of genome regulatory elements in a folded chromosome (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23651551%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23651551%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Alexey Gavrilov

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23651551%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

author name string

Elena S Ioudinkova

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23651551%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Olga V Iarovaia

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23651551%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

language of work or name

English

0 references

publication date

4 May 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23651551%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23651551%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

volume

587

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23651551%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

issue

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23651551%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

page(s)

1840-1847

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23651551%20AND%20SRC:MED&resulttype=core&format=json

Chromosomal subunits in active genes have an altered conformation

29 February 2020

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Beyond lamins other structural components of the nucleoskeleton

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Internal organisation of the nucleus: assembly of compartments by macromolecular crowding and the nuclear matrix model

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Macromolecular crowding and its potential impact on nuclear function

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Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages

21 January 2018

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Direct interactions of OCA-B and TFII-I regulate immunoglobulin heavy-chain gene transcription by facilitating enhancer-promoter communication

21 January 2018

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A positive role for NLI/Ldb1 in long-range beta-globin locus control region function

21 January 2018

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Controlling long-range genomic interactions at a native locus by targeted tethering of a looping factor

21 January 2018

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CTCF: master weaver of the genome

21 January 2018

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Super-resolution imaging reveals three-dimensional folding dynamics of the β-globin locus upon gene activation

21 January 2018

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Analysis of long-range chromatin interactions using Chromosome Conformation Capture

21 January 2018

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A chromatin insulator driving three-dimensional Polycomb response element (PRE) contacts and Polycomb association with the chromatin fiber

21 January 2018

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Disclosure of a structural milieu for the proximity ligation reveals the elusive nature of an active chromatin hub.

21 January 2018

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Transcription complex stability and chromatin dynamics in vivo.

21 January 2018

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Polycomb response elements mediate the formation of chromosome higher-order structures in the bithorax complex.

21 January 2018

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Insulators, not Polycomb response elements, are required for long-range interactions between Polycomb targets in Drosophila melanogaster

21 January 2018

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The dynamic architecture of Hox gene clusters.

21 January 2018

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EZH2-dependent chromatin looping controls INK4a and INK4b, but not ARF, during human progenitor cell differentiation and cellular senescence.

21 January 2018

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The three-dimensional architecture of Hox cluster silencing

21 January 2018

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A view of nuclear Polycomb bodies

21 January 2018

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Transcriptional repression mediated by repositioning of genes to the nuclear lamina

21 January 2018

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Long distance relationships: enhancer-promoter communication and dynamic gene transcription.

21 January 2018

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Transcription factors mediate long-range enhancer-promoter interactions

21 January 2018

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Characterization of the chicken beta-globin insulator

21 January 2018

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Human tRNA genes function as chromatin insulators

21 January 2018

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Insulators and promoters: closer than we think

21 January 2018

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CCCTC-binding factor: to loop or to bridge

21 January 2018

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CTCF shapes chromatin by multiple mechanisms: the impact of 20 years of CTCF research on understanding the workings of chromatin

21 January 2018

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Does CTCF mediate between nuclear organization and gene expression?

21 January 2018

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Cell type specificity of chromatin organization mediated by CTCF and cohesin.

21 January 2018

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CTCF/cohesin-mediated DNA looping is required for protocadherin α promoter choice

21 January 2018

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The long-range interaction landscape of gene promoters

21 January 2018

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Genome-wide studies of CCCTC-binding factor (CTCF) and cohesin provide insight into chromatin structure and regulation

21 January 2018

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Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules

21 January 2018

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Chromatin higher-order structures and gene regulation

21 January 2018

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Chromatin organization - the 30 nm fiber

21 January 2018

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Comprehensive mapping of long-range interactions reveals folding principles of the human genome

21 January 2018

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The fractal globule as a model of chromatin architecture in the cell

21 January 2018

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The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules

21 January 2018

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Secondary structures of the core histone N-terminal tails: their role in regulating chromatin structure

21 January 2018

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HMG proteins: dynamic players in gene regulation and differentiation

21 January 2018

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HMGB proteins: interactions with DNA and chromatin

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Bending of DNA by transcription factors

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Spatially precise DNA bending is an essential activity of the sox2 transcription factor

21 January 2018

1 reference

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NFI and Oct-1 bend the Ad5 origin in the same direction leading to optimal DNA replication

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Replication from oriP of Epstein-Barr virus requires exact spacing of two bound dimers of EBNA1 which bend DNA.

21 January 2018

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The CTCF insulator protein forms an unusual DNA structure

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Transcription factories: structures conserved during differentiation and evolution

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Transcription factories: gene expression in unions?

21 January 2018

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Transcription factories in the context of the nuclear and genome organization

21 January 2018

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21 January 2018

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Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells

21 January 2018

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Active genes dynamically colocalize to shared sites of ongoing transcription

21 January 2018

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Active chromatin hub of the mouse alpha-globin locus forms in a transcription factory of clustered housekeeping genes

21 January 2018

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Myc dynamically and preferentially relocates to a transcription factory occupied by Igh

21 January 2018

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The role of transcription factories in large-scale structure and dynamics of interphase chromatin.

21 January 2018

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Active RNA polymerases: mobile or immobile molecular machines?

21 January 2018

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PML bodies: a meeting place for genomic loci?

21 January 2018

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Gamma interferon-dependent transcriptional memory via relocalization of a gene locus to PML nuclear bodies

21 January 2018

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The relationship of the nuclear matrix to cellular structure and function

21 January 2018

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DNA interactions with the nuclear matrix and spatial organization of replication and transcription

21 January 2018

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The channels model of nuclear matrix structure.

21 January 2018

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NuMA after 30 years: the matrix revisited.

21 January 2018

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Relationship between DNA replication and the nuclear matrix.

21 January 2018

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The nucleoskeleton as a genome-associated dynamic 'network of networks'.

21 January 2018

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The nucleoskeleton: a permanent structure of cell nuclei regardless of their transcriptional activity

21 January 2018

1 reference

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Proteomic analysis of the nuclear matrix in the early stages of rat liver carcinogenesis: identification of differentially expressed and MAR-binding proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

The role of nuclear matrix proteins binding to matrix attachment regions (Mars) in prostate cancer cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Nuclear architecture by RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Architectural roles of long noncoding RNAs in the intranuclear formation of functional paraspeckles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Chromatin architecture and nuclear RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

RNA-dependent nuclear matrix contains a 33 kb globin full domain transcript as well as prosomes but no 26S proteasomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Nucleic-acid-binding properties of hnRNP-U/SAF-A, a nuclear-matrix protein which binds DNA and RNA in vivo and in vitro

21 January 2018

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SAF-A has a role in transcriptional regulation of Oct4 in ES cells through promoter binding

21 January 2018

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SAF-A forms a complex with BRG1 and both components are required for RNA polymerase II mediated transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Nuclear matrix factor hnRNP U/SAF-A exerts a global control of alternative splicing by regulating U2 snRNP maturation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

The matrix protein hnRNP U is required for chromosomal localization of Xist RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Revisiting the function of nuclear scaffold/matrix binding proteins in X chromosome inactivation

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Chromosomal loop anchorage of the kappa immunoglobulin gene occurs next to the enhancer in a region containing topoisomerase II sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Organization of the higher-order chromatin loop: specific DNA attachment sites on nuclear scaffold

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

S/MARt DB: a database on scaffold/matrix attached regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

A mini review of MAR-binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Binding of matrix attachment regions to lamin polymers involves single-stranded regions and the minor groove

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Lamina-independent lamins in the nuclear interior serve important functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

The nucleoskeleton: lamins and actin are major players in essential nuclear functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Interactions between the nuclear matrix and an enhancer of the tryptophan oxygenase gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Tissue-specific nuclear architecture and gene expression regulated by SATB1

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

The BCL2 gene is regulated by a special AT-rich sequence binding protein 1-mediated long range chromosomal interaction between the promoter and the distal element located within the 3'-UTR

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Inter-MAR association contributes to transcriptionally active looping events in human beta-globin gene cluster

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Functional interaction between PML and SATB1 regulates chromatin-loop architecture and transcription of the MHC class I locus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Stress-induced duplex DNA destabilization in scaffold/matrix attachment regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Macromolecular diffusion in crowded solutions

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Macromolecular crowding: obvious but underappreciated

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

A role for macromolecular crowding effects in the assembly and function of compartments in the nucleus

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

The depletion attraction: an underappreciated force driving cellular organization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Entropy-driven genome organization

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Structure of human telomeric DNA in crowded solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Entropic organization of interphase chromosomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Protein dynamics: implications for nuclear architecture and gene expression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Chromatin dynamics in living cells: identification of oscillatory motion

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Order and disorder in the nucleus

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Interphase chromosomes undergo constrained diffusional motion in living cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Chromatin dynamics in interphase cells revealed by tracking in a two-photon excitation microscope

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Modulation of heterochromatin protein 1 dynamics in primary Mammalian cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

High- and low-mobility populations of HP1 in heterochromatin of mammalian cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Polycomb group protein complexes exchange rapidly in living Drosophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Ultrastructural changes of nucleoli in common wheat induced by actinomycin D.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Nucleolar disruption leads to the spatial separation of key 18S rRNA processing factors.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Enhancers and silencers: an integrated and simple model for their function

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

TMEM8 - a non-globin gene entrapped in the globin web.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027

Topological domains in mammalian genomes identified by analysis of chromatin interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2013.04.027