(Q38193405)

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sigmaS, a major player in the response to environmental stresses in Escherichia coli: role, regulation and mechanisms of promoter recognition.

scientific article published on 21 October 2013

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24596257%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

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Europe PubMed Central

sigmaS, a major player in the response to environmental stresses in Escherichia coli: role, regulation and mechanisms of promoter recognition (English)

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Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24596257%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

environmental stress

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based on heuristic

inferred from title

Escherichia coli

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based on heuristic

inferred from title

1

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24596257%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

author name string

Thomas Egli

2

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24596257%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

Johannes Wolf

3

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24596257%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

Stephan Lacour

4

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Europe PubMed Central

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9 March 2020

publication date

21 October 2013

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Europe PubMed Central

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9 March 2020

Environmental Microbiology Reports

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Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24596257%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

6

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Europe PubMed Central

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9 March 2020

1

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Europe PubMed Central

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9 March 2020

1-13

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Europe PubMed Central

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9 March 2020

Identity and function of a large gene network underlying mutagenic repair of DNA breaks

1 reference

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21 January 2018

RpoS plays a central role in the SOS induction by sub-lethal aminoglycoside concentrations in Vibrio cholerae

1 reference

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21 January 2018

The Escherichia coli histone-like protein HU regulates rpoS translation.

1 reference

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21 January 2018

Region 2.5 of the Escherichia coli RNA polymerase sigma70 subunit is responsible for the recognition of the 'extended-10' motif at promoters

1 reference

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21 January 2018

The RpoS-mediated general stress response in Escherichia coli

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

What makes an Escherichia coli promoter sigma(S) dependent? Role of the -13/-14 nucleotide promoter positions and region 2.5 of sigma(S).

1 reference

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21 January 2018

Regulation of RpoS proteolysis in Escherichia coli: the response regulator RssB is a recognition factor that interacts with the turnover element in RpoS

1 reference

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21 January 2018

The response regulator RssB, a recognition factor for sigmaS proteolysis in Escherichia coli, can act like an anti-sigmaS factor.

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

The guanosine tetraphosphate (ppGpp) alarmone, DksA and promoter affinity for RNA polymerase in regulation of sigma-dependent transcription.

1 reference

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21 January 2018

The entericidin locus of Escherichia coli and its implications for programmed bacterial cell death.

1 reference

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21 January 2018

The csgD mRNA as a hub for signal integration via multiple small RNAs.

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

ppGpp regulation of RpoS degradation via anti-adaptor protein IraP.

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Multiple pathways for regulation of sigmaS (RpoS) stability in Escherichia coli via the action of multiple anti-adaptors.

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

DNA sequence elements located immediately upstream of the -10 hexamer in Escherichia coli promoters: a systematic study

1 reference

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21 January 2018

Interactions between the 2.4 and 4.2 regions of sigmaS, the stress-specific sigma factor of Escherichia coli, and the -10 and -35 promoter elements

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Redefining Escherichia coli σ(70) promoter elements: -15 motif as a complement of the -10 motif

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

RNA polymerase holoenzymes can share a single transcription start site for the Pm promoter. Critical nucleotides in the -7 to -18 region are needed to select between RNA polymerase with sigma38 or sigma32.

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Control of RpoS in global gene expression of Escherichia coli in minimal media.

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

RpoS regulation of gene expression during exponential growth of Escherichia coli K12.

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Expression dynamics of RpoS/Crl-dependent genes in Escherichia coli

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Binding of the unorthodox transcription activator, Crl, to the components of the transcription machinery

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Salmonella produces an O-antigen capsule regulated by AgfD and important for environmental persistence

1 reference

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21 January 2018

General pathway for turning on promoters transcribed by RNA polymerases containing alternative sigma factors

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Biofilm formation-gene expression relay system in Escherichia coli: modulation of sigmaS-dependent gene expression by the CsgD regulatory protein via sigmaS protein stabilization

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Proteolysis of sigmaS (RpoS) and the general stress response in Escherichia coli

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Back to log phase: sigma S as a global regulator in the osmotic control of gene expression in Escherichia coli

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Role of ppGpp in rpoS stationary-phase regulation in Escherichia coli

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Reduced hydroperoxidase (HPI and HPII) activity in the Deltafur mutant contributes to increased sensitivity to UVA radiation in Escherichia coli.

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Bacterial persistence increases as environmental fitness decreases.

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Antitoxin DinJ influences the general stress response through transcript stabilizer CspE.

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Specific growth rate and not cell density controls the general stress response in Escherichia coli

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Prokaryotic genome regulation: multifactor promoters, multitarget regulators and hierarchic networks

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Regulation of sigma factor competition by the alarmone ppGpp

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Regulation of 6S RNA biogenesis by switching utilization of both sigma factors and endoribonucleases

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Genotype-by-environment interactions influencing the emergence of rpoS mutations in Escherichia coli populations

1 reference

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21 January 2018

Transcriptional regulation by cAMP and its receptor protein

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

The stationary-phase sigma factor sigma(S) is responsible for the resistance of Escherichia coli stationary-phase cells to mazEF-mediated cell death

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: function of sigmaS-dependent genes and identification of their promoter sequences.

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Mechanism of specific recognition of the aidB promoter by sigma(S)-RNA polymerase

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Nucleotides from -16 to -12 determine specific promoter recognition by bacterial sigmaS-RNA polymerase.

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Substitutions in region 2.4 of sigma70 allow recognition of the sigmaS-dependent aidB promoter.

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Cross-talk mechanisms in biofilm formation and responses to environmental and physiological stress in Escherichia coli.

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

The nlpD gene is located in an operon with rpoS on the Escherichia coli chromosome and encodes a novel lipoprotein with a potential function in cell wall formation

1 reference

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21 January 2018

The cellular concentration of the sigma S subunit of RNA polymerase in Escherichia coli is controlled at the levels of transcription, translation, and protein stability

1 reference

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21 January 2018

Riboregulation by DsrA RNA: trans-actions for global economy

1 reference

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21 January 2018

Vibrio vulnificus rpoS expression is repressed by direct binding of cAMP-cAMP receptor protein complex to its two promoter regions.

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Sigma38 (rpoS) RNA polymerase promoter engagement via -10 region nucleotides

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

LrhA as a new transcriptional key regulator of flagella, motility and chemotaxis genes in Escherichia coli.

1 reference

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21 January 2018

The role of the sigma factor sigma S (KatF) in bacterial global regulation

1 reference

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21 January 2018

In vitro transcription profiling of the σS subunit of bacterial RNA polymerase: re-definition of the σS regulon and identification of σS-specific promoter sequence elements

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Competition among seven Escherichia coli sigma subunits: relative binding affinities to the core RNA polymerase

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

ppGpp: a global regulator in Escherichia coli.

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Regulation and mode of action of the second small RNA activator of RpoS translation, RprA

1 reference

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21 January 2018

Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli

1 reference

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21 January 2018

Growth phase and (p)ppGpp control of IraD, a regulator of RpoS stability, in Escherichia coli

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

A two-component phosphotransfer network involving ArcB, ArcA, and RssB coordinates synthesis and proteolysis of sigmaS (RpoS) in E. coli

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Identification and analysis of 'extended -10' promoters in Escherichia coli.

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

The RNA-binding protein HF-I, known as a host factor for phage Qbeta RNA replication, is essential for rpoS translation in Escherichia coli

1 reference

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21 January 2018

Stationary-phase physiology

1 reference

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21 January 2018

Microarray analysis of RpoS-mediated gene expression in Escherichia coli K-12.

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

The global repressor FliZ antagonizes gene expression by σS-containing RNA polymerase due to overlapping DNA binding specificity

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

LrhA regulates rpoS translation in response to the Rcs phosphorelay system in Escherichia coli

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Role of CspC and CspE in regulation of expression of RpoS and UspA, the stress response proteins in Escherichia coli

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymerase

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

RpoS-dependent transcriptional control of sprE: regulatory feedback loop

1 reference

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21 January 2018

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more.

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21 January 2018

Are respiratory enzymes the primary sources of intracellular hydrogen peroxide?

1 reference

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21 January 2018

Escherichia coli σ⁷⁰ senses sequence and conformation of the promoter spacer region

1 reference

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21 January 2018

Gene expression patterns and differential input into curli fimbriae regulation of all GGDEF/EAL domain proteins in Escherichia coli.

1 reference

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21 January 2018

Heterogeneity of the principal sigma factor in Escherichia coli: the rpoS gene product, sigma 38, is a second principal sigma factor of RNA polymerase in stationary-phase Escherichia coli.

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

Functional characterization and regulation of gadX, a gene encoding an AraC/XylS-like transcriptional activator of the Escherichia coli glutamic acid decarboxylase system

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21 January 2018

A multifactor regulatory circuit involving H-NS, VirF and an antisense RNA modulates transcription of the virulence gene icsA of Shigella flexneri.

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21 January 2018

A highly conserved 6S RNA structure is required for regulation of transcription

1 reference

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21 January 2018

The PhoP/PhoQ two-component system stabilizes the alternative sigma factor RpoS in Salmonella enterica

1 reference

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21 January 2018

Differential ability of sigma(s) and sigma70 of Escherichia coli to utilize promoters containing half or full UP-element sites.

1 reference

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21 January 2018

Role of the spacer between the -35 and -10 regions in sigmas promoter selectivity in Escherichia coli

1 reference

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21 January 2018

Stationary phase reorganisation of the Escherichia coli transcription machinery by Crl protein, a fine-tuner of sigmas activity and levels

1 reference

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21 January 2018

The molecular basis of selective promoter activation by the sigmaS subunit of RNA polymerase.

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12112

21 January 2018

The -35 sequence location and the Fis-sigma factor interface determine sigmas selectivity of the proP (P2) promoter in Escherichia coli.

1 reference

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21 January 2018

Control of rpoS transcription in Escherichia coli and Pseudomonas: why so different?

1 reference

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21 January 2018

Changes in conserved region 2 of Escherichia coli sigma 70 affecting promoter recognition

1 reference

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21 January 2018

Antitoxin MqsA helps mediate the bacterial general stress response

1 reference

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21 January 2018

Identification of novel small RNAs using comparative genomics and microarrays

1 reference

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21 January 2018

Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity

1 reference

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21 January 2018

Thin aggregative fimbriae and cellulose enhance long-term survival and persistence of Salmonella

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21 January 2018

The apparent clock-like evolution of Escherichia coli in glucose-limited chemostats is reproducible at large but not at small population sizes and can be explained with Monod kinetics

1 reference

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21 January 2018

Microbial competition: Escherichia coli mutants that take over stationary phase cultures

1 reference

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21 January 2018

The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) protein

1 reference

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21 January 2018

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