(Q38200466)

30 August 2017

title

The bright side of transposons in crop evolution (English)

1 reference

30 August 2017

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24681749%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Karine Alix

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24681749%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Maud I Tenaillon

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24681749%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

author name string

Margaux-Alison Fustier

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24681749%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

language of work or name

1 reference

27 March 2014

1 reference

Briefings in functional genomics

30 August 2017

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24681749%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

volume

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24681749%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

issue

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24681749%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

page(s)

276-295

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24681749%20AND%20SRC:MED&resulttype=core&format=json

Amplicons of maize zein genes are conserved within genic but expanded and constricted in intergenic regions.

12 June 2020

cites work

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Sequence and analysis of the tomato JOINTLESS locus

21 January 2018

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Nested retrotransposons in the intergenic regions of the maize genome

21 January 2018

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Ancestral polyploidy in seed plants and angiosperms

21 January 2018

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A comparative view of the evolution of grasses under domestication

21 January 2018

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https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution

21 January 2018

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Multi-gene analysis provides a well-supported phylogeny of Rosales

21 January 2018

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The genome of melon (Cucumis melo L.).

21 January 2018

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The genome of woodland strawberry (Fragaria vesca)

21 January 2018

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The genome of the pear (Pyrus bretschneideri Rehd.).

21 January 2018

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The genome of the domesticated apple (Malus × domestica Borkh.)

21 January 2018

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The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

21 January 2018

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Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces

21 January 2018

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The tomato genome sequence provides insights into fleshy fruit evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).

21 January 2018

1 reference

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The repetitive component of the sunflower genome as shown by different procedures for assembling next generation sequencing reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

The Sorghum bicolor genome and the diversification of grasses

21 January 2018

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https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Rapid recent growth and divergence of rice nuclear genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Remarkable variation in maize genome structure inferred from haplotype diversity at the bz locus

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Active transposition in genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

The impact of transposable elements in environmental adaptation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

The genomic organization of retrotransposons in Brassica oleracea

21 January 2018

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https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Gene galaxies in the maize genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Recent amplification and impact of MITEs on the genome of grapevine (Vitis vinifera L.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

A computer-based systematic survey reveals the predominance of small inverted-repeat elements in wild-type rice genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Stowaway: a new family of inverted repeat elements associated with the genes of both monocotyledonous and dicotyledonous plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Maize genetic diversity and association mapping using transposable element insertion polymorphisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Identification of a transposon-like insertion in a Glu-1 allele of wheat

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

The wheat and barley vernalization gene VRN3 is an orthologue of FT

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Conserved noncoding genomic sequences associated with a flowering-time quantitative trait locus in maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Identification of a functional transposon insertion in the maize domestication gene tb1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

A transposon-induced epigenetic change leads to sex determination in melon

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Molecular basis of evolutionary events that shaped the hardness locus in diploid and polyploid wheat species (Triticum and Aegilops).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Transposon Display identifies individual transposable elements in high copy number lines.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Impact of transposable elements on the organization and function of allopolyploid genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Mobilization of retrotransposons in synthetic allotetraploid tobacco.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Allopolyploidy has a moderate impact on restructuring at three contrasting transposable element insertion sites in resynthesized Brassica napus allotetraploids.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic marks for open chromatin across the maize genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Mapping and sequencing of structural variation from eight human genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Selective epigenetic control of retrotransposition in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Transpositional landscape of the rice genome revealed by paired-end mapping of high-throughput re-sequencing data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

High-resolution mapping of copy-number alterations with massively parallel sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Validation of rearrangement break points identified by paired-end sequencing in natural populations of Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

inGAP-sv: a novel scheme to identify and visualize structural variation from paired end mapping data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Computational methods for discovering structural variation with next-generation sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Statistical challenges associated with detecting copy number variations with next-generation sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

The use of RelocaTE and unassembled short reads to produce high-resolution snapshots of transposable element generated diversity in rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Population genomics of transposable elements in Drosophila melanogaster.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

The population genetics of Drosophila transposable elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

The evolution of transposable elements in natural populations of self-fertilizing Arabidopsis thaliana and its outcrossing relative Arabidopsis lyrata

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Demography and weak selection drive patterns of transposable element diversity in natural populations of Arabidopsis lyrata

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Size matters: non-LTR retrotransposable elements and ectopic recombination in Drosophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Inferring the strength of selection in Drosophila under complex demographic models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

The effects of artificial selection on the maize genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Molecular evidence for a single evolutionary origin of domesticated rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Molecular demographic history of the annual sunflowers Helianthus annuus and H. petiolaris--large effective population sizes and rates of long-term gene flow

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

New insight into the history of domesticated apple: secondary contribution of the European wild apple to the genome of cultivated varieties

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

A recent adaptive transposable element insertion near highly conserved developmental loci in Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

The structure of genealogies in the presence of purifying selection: a fitness-class coalescent

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

The quest for adaptive evolution: a theoretical challenge in a maze of data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

21 January 2018

Estimating F-statistics

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Measures of human population structure show heterogeneity among genomic regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Genome-wide scans for footprints of natural selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Detecting loci under selection in a hierarchically structured population

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Staying afloat in the sensor data deluge

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Genome-wide patterns of adaptation to temperate environments associated with transposable elements in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Using environmental correlations to identify loci underlying local adaptation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Testing for associations between loci and environmental gradients using latent factor mixed models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

ZmCCT and the genetic basis of day-length adaptation underlying the postdomestication spread of maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Association and linkage analysis of aluminum tolerance genes in maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Association studies identify natural variation at PHYC linked to flowering time and morphological variation in pearl millet

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Genome-wide association studies of 14 agronomic traits in rice landraces.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Single nucleotide polymorphisms in the allene oxide synthase 2 gene are associated with field resistance to late blight in populations of tetraploid potato cultivars

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Association mapping in sunflower for Sclerotinia Head Rot resistance.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Structure and coding properties of Bs1, a maize retrovirus-like transposon

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Identification of active transposon dTok, a member of the hAT family, in rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

An active DNA transposon nDart causing leaf variegation and mutable dwarfism and its related elements in rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

A novel wx mutation caused by insertion of a retrotransposon-like sequence in a glutinous cultivar of rice (Oryza sativa).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Genetic redundancy in soybean photoresponses associated with duplication of the phytochrome A gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Miniature inverted-repeat transposable elements of Stowaway are active in potato

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Molecular characterization of a mutable pigmentation phenotype and isolation of the first active transposable element from Sorghum bicolor

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

The wp mutation of Glycine max carries a gene-fragment-rich transposon of the CACTA superfamily

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Excision of an active CACTA-like transposable element from DFR2 causes variegated flowers in soybean [Glycine max (L.) Merr.].

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Transposon-mediated mutations in the untranslated leader of maize Adh1 that increase and decrease pollen-specific gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Contrasting effects of selection on sequence diversity and linkage disequilibrium at two phytoene synthase loci

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

A gene in the multidrug and toxic compound extrusion (MATE) family confers aluminum tolerance in sorghum.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

White grapes arose through the mutation of two similar and adjacent regulatory genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Refunctionalization of the ancient rice blast disease resistance gene Pit by the recruitment of a retrotransposon as a promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

The purple cauliflower arises from activation of a MYB transcription factor

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Transposon-induced gene activation as a mechanism generating cluster shape somatic variation in grapevine.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

A Novel Retrotransposon Inserted in the Dominant Vrn-B1 Allele Confers Spring Growth Habit in Tetraploid Wheat (Triticum turgidum L.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Retrotransposons control fruit-specific, cold-dependent accumulation of anthocyanins in blood oranges

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Modulation of auxin-binding protein 1 gene expression in maize and the teosintes by transposon insertions in its promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

A mutation in the rice chalcone isomerase gene causes the golden hull and internode 1 phenotype.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

A large insertion in bHLH transcription factor BrTT8 resulting in yellow seed coat in Brassica rapa

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

A transposable element insertion within ZmGE2 gene is associated with increase in embryo to endosperm ratio in maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

CACTA-like transposable element in ZmCCT attenuated photoperiod sensitivity and accelerated the postdomestication spread of maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Integration and nonrandom mutation of a plasma membrane proton ATPase gene fragment within the Bs1 retroelement of maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

A novel hybrid open reading frame formed by multiple cellular gene transductions by a plant long terminal repeat retroelement

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Bs1, a new chimeric gene formed by retrotransposon-mediated exon shuffling in maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Transposition of reversed Ac element ends generates novel chimeric genes in maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

A hAT superfamily transposase recruited by the cereal grass genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Helitron mediated amplification of cytochrome P450 monooxygenase gene in maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

A retrotransposon-mediated gene duplication underlies morphological variation of tomato fruit

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Transposon-induced promoter scrambling: a mechanism for the evolution of new alleles

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Large-scale survey of cytosine methylation of retrotransposons and the impact of readout transcription from long terminal repeats on expression of adjacent rice genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Transposable elements as mutator genes in evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

Unexpected consequences of a sudden and massive transposon amplification on rice gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

The evolutionary dynamics of repetitive DNA in eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU002

A physical, genetic and functional sequence assembly of the barley genome

21 January 2018

1 reference

COCI

https://opencitations.net/index/coci/api/v1/citations/10.1038/NATURE11543

15 July 2023

Identifiers

DOI

10.1093/BFGP/ELU002

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24681749%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

1 reference