(Q38204896)

31 August 2017

A versatile framework for microbial engineering using synthetic non-coding RNAs (English)

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31 August 2017

2

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31 August 2017

Lei S Qi

1

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language of work or name

English

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publication date

1 May 2014

1 reference

Nature Reviews Microbiology

31 August 2017

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31 August 2017

12

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31 August 2017

5

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31 August 2017

341-354

1 reference

https://scigraph.springernature.com/pub.10.1038/nrmicro3244

31 August 2017

0 references

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Construction of a genetic toggle switch in Escherichia coli

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A synthetic oscillatory network of transcriptional regulators

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Synthetic gene networks that count

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A synchronized quorum of genetic clocks

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Regulating bacterial transcription with small RNAs.

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Small toxic proteins and the antisense RNAs that repress them

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Regulation of translation via mRNA structure in prokaryotes and eukaryotes

21 January 2018

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Structured mRNAs regulate translation initiation by binding to the platform of the ribosome

21 January 2018

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Ribonuclease E provides substrates for ribonuclease P-dependent processing of a polycistronic mRNA.

21 January 2018

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Ribozyme structures and mechanisms

21 January 2018

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Ribozymes, riboswitches and beyond: regulation of gene expression without proteins

21 January 2018

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Synthetic RNA circuits

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RNA synthetic biology inspired from bacteria: construction of transcription attenuators under antisense regulation.

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Engineering biological systems with synthetic RNA molecules

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Toward scalable parts families for predictable design of biological circuits

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Ribozymes: recent advances in the development of RNA tools

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Organization of intracellular reactions with rationally designed RNA assemblies

21 January 2018

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Higher-order cellular information processing with synthetic RNA devices

21 January 2018

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Versatile RNA-sensing transcriptional regulators for engineering genetic networks

21 January 2018

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Site-specific incorporation of extra components into RNA by transcription using unnatural base pair systems

21 January 2018

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Site-specific labeling of DNA and RNA using an efficiently replicated and transcribed class of unnatural base pairs

21 January 2018

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Synthetic riboswitches that induce gene expression in diverse bacterial species

21 January 2018

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The structural and functional diversity of metabolite-binding riboswitches

21 January 2018

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21 January 2018

The centrality of RNA.

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Synthetic biology: advancing the design of diverse genetic systems

21 January 2018

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The centrality of RNA for engineering gene expression

21 January 2018

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CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes

21 January 2018

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RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex

21 January 2018

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RNA-guided genetic silencing systems in bacteria and archaea

21 January 2018

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Small CRISPR RNAs guide antiviral defense in prokaryotes

21 January 2018

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Evolution and classification of the CRISPR-Cas systems

21 January 2018

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CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III

21 January 2018

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A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity

21 January 2018

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Self versus non-self discrimination during CRISPR RNA-directed immunity.

21 January 2018

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CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea

21 January 2018

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RNA-guided editing of bacterial genomes using CRISPR-Cas systems

21 January 2018

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Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems

21 January 2018

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CRISPR/Cas9-targeted mutagenesis in Caenorhabditis elegans

21 January 2018

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Optimized gene editing technology for Drosophila melanogaster using germ line-specific Cas9.

21 January 2018

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Efficient genome editing in zebrafish using a CRISPR-Cas system

21 January 2018

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Targeted genome modification of crop plants using a CRISPR-Cas system.

21 January 2018

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One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering

21 January 2018

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One-step generation of mice carrying reporter and conditional alleles by CRISPR/Cas-mediated genome engineering

21 January 2018

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Multiplex genome engineering using CRISPR/Cas systems

21 January 2018

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RNA-guided human genome engineering via Cas9

21 January 2018

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RNA-programmed genome editing in human cells

21 January 2018

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Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression

21 January 2018

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Nascent transcript sequencing visualizes transcription at nucleotide resolution

21 January 2018

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Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system

21 January 2018

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CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes

21 January 2018

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CRISPR interference (CRISPRi) for sequence-specific control of gene expression

21 January 2018

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Tunable and multifunctional eukaryotic transcription factors based on CRISPR/Cas

21 January 2018

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Orthogonal Cas9 proteins for RNA-guided gene regulation and editing

21 January 2018

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pT181 plasmid replication is regulated by a countertranscript-driven transcriptional attenuator

21 January 2018

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An antisense RNA-mediated transcriptional attenuation mechanism functions in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3244

A modular strategy for engineering orthogonal chimeric RNA transcription regulators

21 January 2018

1 reference

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Rationally designed families of orthogonal RNA regulators of translation

21 January 2018

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Engineered riboregulators enable post-transcriptional control of gene expression

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO3244

De novo automated design of small RNA circuits for engineering synthetic riboregulation in living cells

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO3244

An adaptor from translational to transcriptional control enables predictable assembly of complex regulation

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO3244

RNAi mechanisms and applications

21 January 2018

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A universal RNAi-based logic evaluator that operates in mammalian cells

21 January 2018

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Multi-input RNAi-based logic circuit for identification of specific cancer cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3244

Library of synthetic 5' secondary structures to manipulate mRNA stability in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3244

A modular and extensible RNA-based gene-regulatory platform for engineering cellular function

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3244

Engineering artificial small RNAs for conditional gene silencing in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3244

Metabolic engineering of Escherichia coli using synthetic small regulatory RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3244

Aptamers come of age - at last

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3244

Reprogramming control of an allosteric signaling switch through modular recombination

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3244

Synthetic protein scaffolds provide modular control over metabolic flux.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3244

Engineering robust control of two-component system phosphotransfer using modular scaffolds

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3244

Bacterial virulence proteins as tools to rewire kinase pathways in yeast and immune cells

21 January 2018

1 reference

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Scaling up digital circuit computation with DNA strand displacement cascades

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3244

Self-assembly of DNA into nanoscale three-dimensional shapes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3244

Regulation of bacterial gene expression by riboswitches

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3244

Reengineering a natural riboswitch by dual genetic selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3244

Engineering complex riboswitch regulation by dual genetic selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3244

A flow cytometry-based screen for synthetic riboswitches

21 January 2018

1 reference

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Design principles for ligand-sensing, conformation-switching ribozymes

21 January 2018

1 reference

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Rational design of artificial riboswitches based on ligand-dependent modulation of internal ribosome entry in wheat germ extract and their applications as label-free biosensors

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3244

Reprogramming cellular behavior with RNA controllers responsive to endogenous proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3244

Genetic control of mammalian T-cell proliferation with synthetic RNA regulatory systems

21 January 2018

1 reference

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Dynamically reshaping signaling networks to program cell fate via genetic controllers

21 January 2018

1 reference

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Engineering naturally occurring trans-acting non-coding RNAs to sense molecular signals

21 January 2018

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Mfold web server for nucleic acid folding and hybridization prediction

21 January 2018

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Genetic switchboard for synthetic biology applications

21 January 2018

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RNA processing enables predictable programming of gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3244

Ribozyme-based insulator parts buffer synthetic circuits from genetic context

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3244

Programmable ligand-controlled riboregulators of eukaryotic gene expression.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO3244

Model-driven engineering of RNA devices to quantitatively program gene expression

21 January 2018

1 reference

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Synthetic biology moving into the clinic

21 January 2018

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Full design automation of multi-state RNA devices to program gene expression using energy-based optimization

21 January 2018

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In vitro selection of RNA molecules that bind specific ligands

21 January 2018

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Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase

21 January 2018

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Engineering modular 'ON' RNA switches using biological components

21 January 2018

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A high-throughput, quantitative cell-based screen for efficient tailoring of RNA device activity

21 January 2018

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Composability of regulatory sequences controlling transcription and translation in Escherichia coli

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO3244

Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO3244

Modeling and automation of sequencing-based characterization of RNA structure

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO3244

A two-dimensional mutate-and-map strategy for non-coding RNA structure

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO3244

The cellular environment stabilizes adenine riboswitch RNA structure

21 January 2018

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Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo

21 January 2018

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In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features.

21 January 2018

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Quantitative estimation of activity and quality for collections of functional genetic elements.

21 January 2018

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Precise and reliable gene expression via standard transcription and translation initiation elements

21 January 2018

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Modular cell biology: retroactivity and insulation

21 January 2018

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Ultrasensitivity and noise propagation in a synthetic transcriptional cascade.

21 January 2018

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Sequestration-based bistability enables tuning of the switching boundaries and design of a latch

21 January 2018

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Multi-target regulation by small RNAs synchronizes gene expression thresholds and may enhance ultrasensitive behavior

21 January 2018

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The limits of specificity: an experimental analysis with RNA aptamers to MS2 coat protein variants

21 January 2018

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RNA regulation: a new genetics?

21 January 2018

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The hidden genetic program of complex organisms

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO3244

21 January 2018

https://pubmed.ncbi.nlm.nih.gov/24736794

12 December 2020

inferred from PubMed ID database lookup

Transcriptional regulatory circuits: predicting numbers from alphabets

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Translational control of IS10 transposition

31 March 2020

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Bacterial small RNA regulators: versatile roles and rapidly evolving variations

31 March 2020

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PubMed

https://pubmed.ncbi.nlm.nih.gov/24736794

12 December 2020

inferred from PubMed ID database lookup

IS10 antisense control in vivo is affected by mutations throughout the region of complementarity between the interacting RNAs

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24736794

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1038/NRMICRO3244

1 reference

PubMed ID

24736794

Dimensions Publication ID

31 August 2017

1048901470

0 references

Fatcat ID

release_jqoaw5epznd55fjgp2z3wh3z2m

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/jqoaw5epznd55fjgp2z3wh3z2m

24 November 2022

mapped directly with Wikidata item

PubMed ID

24736794

1 reference

PubMed ID

24736794