(Q38242065)

31 August 2017

title

RNA triplexes: from structural principles to biological and biotech applications (English)

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31 August 2017

Gitali Devi

1

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31 August 2017

Yuan Zhou

2

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31 August 2017

Zhensheng Zhong

3

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31 August 2017

Desiree-Faye Kaixin Toh

4

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31 August 2017

Gang Chen

5

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31 August 2017

publication date

22 August 2014

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Wiley interdisciplinary reviews. RNA

31 August 2017

published in

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31 August 2017

volume

6

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31 August 2017

issue

1

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31 August 2017

page(s)

111-128

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Structural diversity and isomorphism of hydrogen-bonded base interactions in nucleic acids

31 August 2017

cites work

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Annotation of tertiary interactions in RNA structures reveals variations and correlations

21 January 2018

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RNA structural motifs that entail hydrogen bonds involving sugar–phosphate backbone atoms of RNA

21 January 2018

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Novel base triples in RNA structures revealed by graph theoretical searching methods

21 January 2018

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Comprehensive survey and geometric classification of base triples in RNA structures

21 January 2018

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Comparative sequence and structure analysis reveals the conservation and diversity of nucleotide positions and their associated tertiary interactions in the riboswitches

21 January 2018

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Potential in vivo roles of nucleic acid triple-helices

21 January 2018

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The emerging role of triple helices in RNA biology

21 January 2018

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Structure of the human telomerase RNA pseudoknot reveals conserved tertiary interactions essential for function

21 January 2018

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Pseudoknot structures with conserved base triples in telomerase RNAs of ciliates

21 January 2018

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A triple helix within a pseudoknot is a conserved and essential element of telomerase RNA.

21 January 2018

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Solution structure and dynamics of the wild-type pseudoknot of human telomerase RNA

21 January 2018

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Triple-helix structure in telomerase RNA contributes to catalysis

21 January 2018

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Pyrimidine motif triple helix in the Kluyveromyces lactis telomerase RNA pseudoknot is essential for function in vivo

21 January 2018

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Structural basis of glmS ribozyme activation by glucosamine-6-phosphate

21 January 2018

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Structural investigation of the GlmS ribozyme bound to Its catalytic cofactor

21 January 2018

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Structure of the SAM-II riboswitch bound to S-adenosylmethionine

21 January 2018

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Structural Insights into riboswitch control of the biosynthesis of queuosine, a modified nucleotide found in the anticodon of tRNA

21 January 2018

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Cocrystal structure of a class I preQ1 riboswitch reveals a pseudoknot recognizing an essential hypermodified nucleobase

21 January 2018

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The Structural Basis for Recognition of the PreQ0 Metabolite by an Unusually Small Riboswitch Aptamer Domain

21 January 2018

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Structure and mechanism of purine-binding riboswitches

21 January 2018

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Structure of a class II preQ1 riboswitch reveals ligand recognition by a new fold

21 January 2018

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Minor groove RNA triplex in the crystal structure of a ribosomal frameshifting viral pseudoknot

21 January 2018

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Solution structure of the pseudoknot of SRV-1 RNA, involved in ribosomal frameshifting

21 January 2018

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Solution structure of a luteoviral P1-P2 frameshifting mRNA pseudoknot

21 January 2018

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Crystal structure of a luteoviral RNA pseudoknot and model for a minimal ribosomal frameshifting motif

21 January 2018

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Frameshifting RNA pseudoknots: structure and mechanism

21 January 2018

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Functional analysis of the SRV-1 RNA frameshifting pseudoknot.

21 January 2018

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Poly(A) Tail Recognition by a Viral RNA Element Through Assembly of a Triple Helix

21 January 2018

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Conservation of a triple-helix-forming RNA stability element in noncoding and genomic RNAs of diverse viruses

21 January 2018

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Formation of triple-helical structures by the 3'-end sequences of MALAT1 and MENβ noncoding RNAs

21 January 2018

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A triple helix stabilizes the 3' ends of long noncoding RNAs that lack poly(A) tails

21 January 2018

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Crystal structure of a self-splicing group I intron with both exons

21 January 2018

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Crystal structure of a phage Twort group I ribozyme-product complex

21 January 2018

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Crystal Structure of a Self-Spliced Group II Intron

21 January 2018

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The kink-turn: a new RNA secondary structure motif

21 January 2018

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RNA tertiary interactions in the large ribosomal subunit: the A-minor motif

21 January 2018

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RNA structure: reading the ribosome

21 January 2018

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Binding of oligonucleotides to a viral hairpin forming RNA triplexes with parallel G*G*C triplets

21 January 2018

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Triplex structures in an RNA pseudoknot enhance mechanical stability and increase efficiency of -1 ribosomal frameshifting

21 January 2018

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Single-molecule FRET reveals the folding dynamics of the human telomerase RNA pseudoknot domain

21 January 2018

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Conformational capture of the SAM-II riboswitch

21 January 2018

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Multiple conformations of SAM-II riboswitch detected with SAXS and NMR spectroscopy.

21 January 2018

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Viral RNA pseudoknots: versatile motifs in gene expression and replication

21 January 2018

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The A-minor motifs in the decoding recognition process

21 January 2018

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Recognition of cognate transfer RNA by the 30S ribosomal subunit

21 January 2018

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A new understanding of the decoding principle on the ribosome

21 January 2018

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A universal mode of helix packing in RNA.

21 January 2018

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Sequence and structural conservation in RNA ribose zippers

21 January 2018

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Recognition elements for 5' exon substrate binding to the Candida albicans group I intron

21 January 2018

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Molecular recognition by the Candida albicans group I intron: tertiary interactions with an imino G.A pair facilitate binding of the 5' exon and lower the KM for guanosine

21 January 2018

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Thermodynamic stability and structural features of the J4/5 loop in a Pneumocystis carinii group I intron

21 January 2018

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Solution structure of an RNA internal loop with three consecutive sheared GA pairs

21 January 2018

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Consecutive GA pairs stabilize medium-size RNA internal loops

21 January 2018

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21 January 2018

Analysis of RNA motifs

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RNA helical packing in solution: NMR structure of a 30 kDa GAAA tetraloop-receptor complex

21 January 2018

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Structure and folding of a rare, natural kink turn in RNA with an A*A pair at the 2b*2n position

21 January 2018

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The structure and folding of kink turns in RNA.

21 January 2018

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An RNA folding motif: GNRA tetraloop-receptor interactions

21 January 2018

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Nucleoside triples from the group I intron

21 January 2018

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Topology links RNA secondary structure with global conformation, dynamics, and adaptation

21 January 2018

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NMR structure of a classical pseudoknot: interplay of single- and double-stranded RNA

21 January 2018

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NMR structure of the Aquifex aeolicus tmRNA pseudoknot PK1: new insights into the recoding event of the ribosomal trans-translation

21 January 2018

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A guanosine-centric mechanism for RNA chaperone function

21 January 2018

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Stability of triple helices containing RNA and DNA strands: experimental and molecular modeling studies.

21 January 2018

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Nucleic acid hybridization: triplex stability and energetics

21 January 2018

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Structural features and stability of an RNA triple helix in solution

21 January 2018

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Duplex recognition by oligonucleotides containing 2'-deoxy-2'-fluoro-D-arabinose and 2'-deoxy-2'-fluoro-D-ribose. Intermolecular 2'-OH-phosphate contacts versus sugar puckering in the stabilization of triple-helical complexes

21 January 2018

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Recognition of RNA duplexes by chemically modified triplex-forming oligonucleotides

21 January 2018

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Isothermal titration calorimetry of RNA.

21 January 2018

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Short peptide nucleic acids bind strongly to homopurine tract of double helical RNA at pH 5.5.

21 January 2018

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Triple helical recognition of pyrimidine inversions in polypurine tracts of RNA by nucleobase-modified PNA.

21 January 2018

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PNA containing isocytidine nucleobase: synthesis and recognition of double helical RNA.

21 January 2018

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Recognition of double-stranded RNA by guanidine-modified peptide nucleic acids

21 January 2018

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Triple-helical recognition of RNA using 2-aminopyridine-modified PNA at physiologically relevant conditions

21 January 2018

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Sequence selective recognition of double-stranded RNA at physiologically relevant conditions using PNA-peptide conjugates

21 January 2018

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A directional nucleation-zipping mechanism for triple helix formation

21 January 2018

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Sensitive and label-free biosensing of RNA with predicted secondary structures by a triplex affinity capture method

21 January 2018

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Direct measurement of thermodynamic and kinetic parameters of DNA triple helix formation by fluorescence spectroscopy

21 January 2018

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Sequence-specific recognition of double helical RNA and RNA.DNA by triple helix formation

21 January 2018

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Time-resolved RNA SHAPE chemistry: quantitative RNA structure analysis in one-second snapshots and at single-nucleotide resolution

21 January 2018

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An intermolecular RNA triplex provides insight into structural determinants for the pseudoknot stimulator of -1 ribosomal frameshifting

21 January 2018

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RNA Reactions One Molecule at a Time

21 January 2018

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Kinetics of the triplex-duplex transition in DNA

21 January 2018

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Programmed -1 frameshifting efficiency correlates with RNA pseudoknot conformational plasticity, not resistance to mechanical unfolding

21 January 2018

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Formation of stable DNA triplexes

21 January 2018

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Relative stabilities of triple helices composed of combinations of DNA, RNA and 2'-O-methyl-RNA backbones: chimeric circular oligonucleotides as probes

21 January 2018

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Oligo(2'-O-methyl)ribonucleotides. Effective probes for duplex DNA.

21 January 2018

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PNA hybridizes to complementary oligonucleotides obeying the Watson-Crick hydrogen-bonding rules

21 January 2018

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Efficient pH-independent sequence-specific DNA binding by pseudoisocytosine-containing bis-PNA.

21 January 2018

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Efficient inhibition of miR-155 function in vivo by peptide nucleic acids

21 January 2018

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Targeting pre-miRNA by peptide nucleic acids: a new strategy to interfere in the miRNA maturation.

21 January 2018

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Incorporation of thio-pseudoisocytosine into triplex-forming peptide nucleic acids for enhanced recognition of RNA duplexes

21 January 2018

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Recognition of GC base pairs by triplex forming oligonucleotides containing nucleosides derived from 2-aminopyridine

21 January 2018

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Regulation of the RNA-dependent protein kinase by triple helix formation

21 January 2018

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Inhibition of Rev·RRE complexation by triplex tethered oligonucleotide probes

21 January 2018

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Enzymatic incorporation of a new base pair into DNA and RNA

21 January 2018

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Stacking Effects on Local Structure in RNA: Changes in the Structure of Tandem GA Pairs when Flanking GC Pairs Are Replaced by isoG−isoC Pairs †

21 January 2018

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Stable and selective recognition of three base pairs in the parallel triple-helical DNA binding motif

21 January 2018

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The synthesis of 2-pyrimidinone nucleosides and their incorporation into oligodeoxynucleotides

21 January 2018

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Adaptive Ligand Binding by the Purine Riboswitch in the Recognition of Guanine and Adenine Analogs

21 January 2018

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Adaptive recognition by nucleic acid aptamers

21 January 2018

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New approaches toward recognition of nucleic acid triple helices

21 January 2018

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A peptide nucleic acid-aminosugar conjugate targeting transactivation response element of HIV-1 RNA genome shows a high bioavailability in human cells and strongly inhibits tat-mediated transactivation of HIV-1 transcription

21 January 2018

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Inhibition of microRNA function by antimiR oligonucleotides

21 January 2018

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Targeting a pre-mRNA structure with bipartite antisense molecules modulates tau alternative splicing

21 January 2018

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The double-stranded-RNA-binding motif: interference and much more

21 January 2018

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Regulation of innate immunity through RNA structure and the protein kinase PKR.

21 January 2018

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Viral dsRNA inhibitors prevent self-association and autophosphorylation of PKR.

21 January 2018

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Alpha helix-RNA major groove recognition in an HIV-1 rev peptide-RRE RNA complex

21 January 2018

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Structural model for the cooperative assembly of HIV-1 Rev multimers on the RRE as deduced from analysis of assembly-defective mutants

21 January 2018

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Design of beta-hairpin peptidomimetics that inhibit binding of alpha-helical HIV-1 Rev protein to the rev response element RNA.

21 January 2018

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HIV-1 Rev protein assembles on viral RNA one molecule at a time

21 January 2018

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Efficiency of a programmed -1 ribosomal frameshift in the different subtypes of the human immunodeficiency virus type 1 group M.

21 January 2018

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miRBase: annotating high confidence microRNAs using deep sequencing data

21 January 2018

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FORMATION OF A THREE-STRANDED POLYNUCLEOTIDE MOLECULE

21 January 2018

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21 January 2018

Identifiers

DOI

10.1002/WRNA.1261

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31 August 2017

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