(Q38281289)

1 September 2017

1 reference

title

Applications of genome-scale metabolic network model in metabolic engineering (English)

1 reference

1 September 2017

1 reference

4

1 reference

1 September 2017

Byoungjin Kim

1

1 reference

1 September 2017

Won Jun Kim

series ordinal

2

1 reference

1 September 2017

Dong In Kim

series ordinal

3

1 reference

1 September 2017

publication date

3 December 2014

1 reference

Journal of Industrial Microbiology & Biotechnology

1 September 2017

published in

1 reference

1 September 2017

volume

42

1 reference

1 September 2017

issue

3

1 reference

1 September 2017

page(s)

339-348

1 reference

The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum

1 September 2017

cites work

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Identifying gene targets for the metabolic engineering of lycopene biosynthesis in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

GLAMM: Genome-Linked Application for Metabolic Maps

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Context-specific metabolic networks are consistent with experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Model-driven multi-omic data analysis elucidates metabolic immunomodulators of macrophage activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Inferring carbon sources from gene expression profiles using metabolic flux models

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Improved vanillin production in baker's yeast through in silico design

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Path2Models: large-scale generation of computational models from biochemical pathway maps

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

A retrosynthetic biology approach to metabolic pathway design for therapeutic production

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and Mycobacterium tuberculosis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Prediction of novel synthetic pathways for the production of desired chemicals

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

In silico identification of gene amplification targets for improvement of lycopene production

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

k-OptForce: integrating kinetics with flux balance analysis for strain design

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Flux-sum analysis: a metabolite-centric approach for understanding the metabolic network

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Temporal expression-based analysis of metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Constraint-based strain design using continuous modifications (CosMos) of flux bounds finds new strategies for metabolic engineering.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Improving metabolic flux predictions using absolute gene expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Integration of metabolic modeling and phenotypic data in evaluation and improvement of ethanol production using respiration-deficient mutants of Saccharomyces cerevisiae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

In silico design and adaptive evolution of Escherichia coli for production of lactic acid.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

CASOP: a computational approach for strain optimization aiming at high productivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Exploring the diversity of complex metabolic networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Yeast 5 – an expanded reconstruction of the Saccharomyces cerevisiae metabolic network

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

iBsu1103: a new genome-scale metabolic model of Bacillus subtilis based on SEED annotations

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

High-throughput generation, optimization and analysis of genome-scale metabolic models

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Revising the Representation of Fatty Acid, Glycerolipid, and Glycerophospholipid Metabolism in the Consensus Model of Yeast Metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Analysis of omics data with genome-scale models of metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

A community-driven global reconstruction of human metabolism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

TIGER: Toolbox for integrating genome-scale metabolic models, expression data, and transcriptional regulatory networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Functional integration of a metabolic network model and expression data without arbitrary thresholding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Computational reconstruction of tissue-specific metabolic models: application to human liver metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Metabolic engineering of Escherichia coli for the production of polylactic acid and its copolymers

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Flux-coupled genes and their use in metabolic flux analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

OptORF: Optimal metabolic and regulatory perturbations for metabolic engineering of microbial strains

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

RELATCH: relative optimality in metabolic networks explains robust metabolic and regulatory responses to perturbations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Genome-scale analysis of Mannheimia succiniciproducens metabolism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Cofactor modification analysis: a computational framework to identify cofactor specificity engineering targets for strain improvement.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Genome-scale reconstruction and in silico analysis of the Clostridium acetobutylicum ATCC 824 metabolic network

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

The genome-scale metabolic network analysis of Zymomonas mobilis ZM4 explains physiological features and suggests ethanol and succinic acid production strategies

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

In silico method for modelling metabolism and gene product expression at genome scale

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Systematic evaluation of methods for integration of transcriptomic data into constraint-based models of metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Flux Design: In silico design of cell factories based on correlation of pathway fluxes to desired properties

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Generation of an atlas for commodity chemical production in Escherichia coli and a novel pathway prediction algorithm, GEM-Path

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Optimizing genome-scale network reconstructions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

PathPred: an enzyme-catalyzed metabolic pathway prediction server

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Genome-level transcription data of Yersinia pestis analyzed with a new metabolic constraint-based approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Model based engineering of Pichia pastoris central metabolism enhances recombinant protein production

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Metabolic engineering of Escherichia coli for the production of L-valine based on transcriptome analysis and in silico gene knockout simulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Flux variability scanning based on enforced objective flux for identifying gene amplification targets

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Evolutionary programming as a platform for in silico metabolic engineering

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

OptStrain: a computational framework for redesign of microbial production systems.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

An optimization framework for identifying reaction activation/inhibition or elimination candidates for overproduction in microbial systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Genome-scale reconstruction and analysis of the Pseudomonas putida KT2440 metabolic network facilitates applications in biotechnology

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Flux balance analysis of biological systems: applications and challenges.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Microbial 1-butanol production: Identification of non-native production routes and in silico engineering interventions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

OptForce: an optimization procedure for identifying all genetic manipulations leading to targeted overproductions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

OptFlux: an open-source software platform for in silico metabolic engineering

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

DESHARKY: automatic design of metabolic pathways for optimal cell growth.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Inferring metabolic states in uncharacterized environments using gene-expression measurements

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

GIM3E: condition-specific models of cellular metabolism developed from metabolomics and expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Multidimensional optimality of microbial metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Analysis of optimality in natural and perturbed metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Combined in silico modeling and metabolomics analysis to characterize fed-batch CHO cell culture.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Development and experimental verification of a genome-scale metabolic model for Corynebacterium glutamicum

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Regulatory on/off minimization of metabolic flux changes after genetic perturbations

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Genome-scale metabolic model of methylotrophic yeast Pichia pastoris and its use for in silico analysis of heterologous protein production.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Metabolic engineering of Escherichia coli for the production of fumaric acid

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Predicting metabolic engineering knockout strategies for chemical production: accounting for competing pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

A protocol for generating a high-quality genome-scale metabolic reconstruction

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Integration of time-resolved transcriptomics data with flux-based methods reveals stress-induced metabolic adaptation in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Predicting metabolic fluxes using gene expression differences as constraints.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Computational evaluation of Synechococcus sp. PCC 7002 metabolism for chemical production

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Reconstruction of genome-scale metabolic models for 126 human tissues using mCADRE

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

EMILiO: a fast algorithm for genome-scale strain design.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10295-014-1554-9

Genome-scale metabolic model for Lactococcus lactis MG1363 and its application to the analysis of flavor formation

21 January 2018

1 reference

12 December 2020

XTMS: pathway design in an eXTended metabolic space

1 reference

12 December 2020

Integration of expression data in genome-scale metabolic network reconstructions

1 reference

12 December 2020

Genome-scale models of metabolism and gene expression extend and refine growth phenotype prediction

1 reference

12 December 2020

The SuBliMinaL Toolbox: automating steps in the reconstruction of metabolic networks

1 reference

12 December 2020

Large-scale identification of genetic design strategies using local search

1 reference

12 December 2020

Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods

1 reference

12 December 2020

Network-based prediction of human tissue-specific metabolism

1 reference

12 December 2020

10.1007/S10295-014-1554-9

Identifiers

DOI

1 reference

1 September 2017

1 reference