(Q38343838)

2 September 2017

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title

Histone exchange, chromatin structure and the regulation of transcription (English)

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2 September 2017

Swaminathan Venkatesh

object named as

Swaminathan Venkatesh

series ordinal

1

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Jerry L Workman

series ordinal

2

object named as

Jerry L Workman

1 reference

2 September 2017

4 February 2015

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Nature Reviews Molecular Cell Biology

2 September 2017

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2 September 2017

16

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2 September 2017

178-189

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2 September 2017

3

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https://scigraph.springernature.com/pub.10.1038/nrm3941

2 September 2017

0 references

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New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?

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Histone variants--ancient wrap artists of the epigenome

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Chromatin Structure: A Repeating Unit of Histones and DNA

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The human and mouse replication-dependent histone genes

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The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly

31 March 2020

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Histone variants: dynamic punctuation in transcription

31 March 2020

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Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis

31 March 2020

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A mutation in CSE4, an essential gene encoding a novel chromatin-associated protein in yeast, causes chromosome nondisjunction and cell cycle arrest at mitosis

31 March 2020

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H3.5 is a novel hominid-specific histone H3 variant that is specifically expressed in the seminiferous tubules of human testes

31 March 2020

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Chromatin-to-nucleoprotamine transition is controlled by the histone H2B variant TH2B

31 March 2020

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Crystal structure of the nucleosome core particle at 2.8 A resolution

31 March 2020

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RNA polymerase complexes cooperate to relieve the nucleosomal barrier and evict histones

31 March 2020

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Continuous histone H2B and transcription-dependent histone H3 exchange in yeast cells outside of replication

31 March 2020

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Nucleosome destabilization in the epigenetic regulation of gene expression

31 March 2020

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Structural basis for the histone chaperone activity of Asf1

31 March 2020

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Structures of human nucleosomes containing major histone H3 variants

31 March 2020

1 reference

DAXX envelops a histone H3.3-H4 dimer for H3.3-specific recognition

31 March 2020

1 reference

Structure of the variant histone H3.3–H4 heterodimer in complex with its chaperone DAXX

31 March 2020

1 reference

Genome-scale profiling of histone H3.3 replacement patterns.

31 March 2020

1 reference

Variant histone H3.3 is deposited at sites of nucleosomal displacement throughout transcribed genes while active histone modifications show a promoter-proximal bias

31 March 2020

1 reference

Drosophila GAGA factor directs histone H3.3 replacement that prevents the heterochromatin spreading

31 March 2020

1 reference

Histone H3.3 deposition at E2F-regulated genes is linked to transcription

31 March 2020

1 reference

Histone replacement marks the boundaries of cis-regulatory domains

31 March 2020

1 reference

H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions

31 March 2020

1 reference

Genome-wide incorporation dynamics reveal distinct categories of turnover for the histone variant H3.3.

31 March 2020

1 reference

H3.3-H4 tetramer splitting events feature cell-type specific enhancers

31 March 2020

1 reference

Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones

31 March 2020

1 reference

Variant histone H3.3 marks promoters of transcriptionally active genes during mammalian cell division

31 March 2020

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Developmental roles of histone H3 variants and their chaperones

31 March 2020

1 reference

The double face of the histone variant H3.3.

31 March 2020

1 reference

New functions for an old variant: no substitute for histone H3.3.

31 March 2020

1 reference

Hira-dependent histone H3.3 deposition facilitates PRC2 recruitment at developmental loci in ES cells

31 March 2020

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Crystal structure of a nucleosome core particle containing the variant histone H2A.Z

31 March 2020

1 reference

Conserved Histone Variant H2A.Z Protects Euchromatin from the Ectopic Spread of Silent Heterochromatin

31 March 2020

2 references

https://pubmed.ncbi.nlm.nih.gov/25650798

31 March 2020

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

ANP32E is a histone chaperone that removes H2A.Z from chromatin

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Transcription-associated histone modifications and cryptic transcription

31 March 2020

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TrxG and PcG proteins but not methylated histones remain associated with DNA through replication

31 March 2020

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Acetylation in the globular core of histone H3 on lysine-56 promotes chromatin disassembly during transcriptional activation.

31 March 2020

1 reference

Regulation of transcription through acetylation of H3K122 on the lateral surface of the histone octamer

31 March 2020

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Histone H4-K16 acetylation controls chromatin structure and protein interactions

31 March 2020

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Histone crosstalk between H2B monoubiquitination and H3 methylation mediated by COMPASS.

31 March 2020

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Set2 methylation of histone H3 lysine 36 suppresses histone exchange on transcribed genes

31 March 2020

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Global regulation of H2A.Z localization by the INO80 chromatin-remodeling enzyme is essential for genome integrity

31 March 2020

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Histone H3.3 is enriched in covalent modifications associated with active chromatin

31 March 2020

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Scratching the (lateral) surface of chromatin regulation by histone modifications

31 March 2020

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Histone core modifications regulating nucleosome structure and dynamics

31 March 2020

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Nucleosome remodeling and epigenetics.

31 March 2020

1 reference

A protein complex containing the conserved Swi2/Snf2-related ATPase Swr1p deposits histone variant H2A.Z into euchromatin

31 March 2020

1 reference

The INO80 family of chromatin-remodeling enzymes: regulators of histone variant dynamics

31 March 2020

1 reference

ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex

31 March 2020

1 reference

Stepwise histone replacement by SWR1 requires dual activation with histone H2A.Z and canonical nucleosome

31 March 2020

1 reference

Swc2 is a widely conserved H2AZ-binding module essential for ATP-dependent histone exchange

31 March 2020

1 reference

A histone acetylation switch regulates H2A.Z deposition by the SWR-C remodeling enzyme

31 March 2020

1 reference

Acetylation by Tip60 is required for selective histone variant exchange at DNA lesions

31 March 2020

1 reference

Purification of a human SRCAP complex that remodels chromatin by incorporating the histone variant H2A.Z into nucleosomes

31 March 2020

1 reference

Human SRCAP and Drosophila melanogaster DOM are homologs that function in the notch signaling pathway

31 March 2020

1 reference

The mammalian YL1 protein is a shared subunit of the TRRAP/TIP60 histone acetyltransferase and SRCAP complexes

31 March 2020

1 reference

Identification of a novel SNF2/SWI2 protein family member, SRCAP, which interacts with CREB-binding protein

31 March 2020

1 reference

The INO80 chromatin remodeling complex in transcription, replication and repair

31 March 2020

1 reference

SWR-C and INO80 chromatin remodelers recognize nucleosome-free regions near +1 nucleosomes.

31 March 2020

1 reference

Chaperone Nap1 shields histone surfaces used in a nucleosome and can put H2A-H2B in an unconventional tetrameric form.

31 March 2020

1 reference

Histone chaperones: an escort network regulating histone traffic

31 March 2020

1 reference

Structural basis of histone H2A-H2B recognition by the essential chaperone FACT

31 March 2020

1 reference

The histone chaperones Nap1 and Vps75 bind histones H3 and H4 in a tetrameric conformation

31 March 2020

1 reference

Human histone chaperone nucleophosmin enhances acetylation-dependent chromatin transcription

31 March 2020

1 reference

Chz1, a nuclear chaperone for histone H2AZ.

31 March 2020

1 reference

Structural basis for recognition of H3K56-acetylated histone H3–H4 by the chaperone Rtt106

31 March 2020

1 reference

Remodeling the chromatin structure of a nucleosome array by transcription factor-targeted trans-displacement of histones.

31 March 2020

1 reference

Chromatin remodeling by nucleosome disassembly in vitro

31 March 2020

1 reference

Histone density is maintained during transcription mediated by the chromatin remodeler RSC and histone chaperone NAP1 in vitro

31 March 2020

1 reference

Rtt109 acetylates histone H3 lysine 56 and functions in DNA replication

31 March 2020

1 reference

Yeast Rtt109 promotes genome stability by acetylating histone H3 on lysine 56

31 March 2020

1 reference

Genome-wide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1.

31 March 2020

1 reference

Asf1 mediates histone eviction and deposition during elongation by RNA polymerase II.

31 March 2020

1 reference

Catalytic activation of histone acetyltransferase Rtt109 by a histone chaperone

31 March 2020

1 reference

Histone H3-K56 acetylation is catalyzed by histone chaperone-dependent complexes

31 March 2020

1 reference

Cell cycle- and chaperone-mediated regulation of H3K56ac incorporation in yeast

31 March 2020

1 reference

Roles for Ctk1 and Spt6 in regulating the different methylation states of histone H3 lysine 36.

31 March 2020

1 reference

The Spt6 SH2 domain binds Ser2-P RNAPII to direct Iws1-dependent mRNA splicing and export

31 March 2020

1 reference

Histone H3 K36 methylation is mediated by a trans-histone methylation pathway involving an interaction between Set2 and histone H4

31 March 2020

1 reference

A nucleosome surface formed by histone H4, H2A, and H3 residues is needed for proper histone H3 Lys36 methylation, histone acetylation, and repression of cryptic transcription.

31 March 2020

1 reference

Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription

31 March 2020

1 reference

Transcription elongation factors repress transcription initiation from cryptic sites.

31 March 2020

1 reference

Histone acetyltransferase complexes stabilize swi/snf binding to promoter nucleosomes.

31 March 2020

1 reference

Nucleosome-depleted chromatin gaps recruit assembly factors for the H3.3 histone variant

31 March 2020

1 reference

DNA bending and its relation to nucleosome positioning.

31 March 2020

1 reference

A genomic code for nucleosome positioning

31 March 2020

1 reference

Mechanisms that specify promoter nucleosome location and identity

31 March 2020

1 reference

RSC-dependent constructive and destructive interference between opposing arrays of phased nucleosomes in yeast.

31 March 2020

1 reference

Nucleosome-free region dominates histone acetylation in targeting SWR1 to promoters for H2A.Z replacement

31 March 2020

1 reference

Genome-scale identification of nucleosome positions in S. cerevisiae

31 March 2020

1 reference

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

31 March 2020

1 reference

Histone H2A.Z cooperates with RNAi and heterochromatin factors to suppress antisense RNAs

31 March 2020

1 reference

Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss

31 March 2020

1 reference

Dynamics of Replication-Independent Histone Turnover in Budding Yeast

31 March 2020

1 reference

NuA4-directed chromatin transactions throughout the Saccharomyces cerevisiae genome

31 March 2020

1 reference

NuA4-dependent acetylation of nucleosomal histones H4 and H2A directly stimulates incorporation of H2A.Z by the SWR1 complex.

31 March 2020

1 reference

Roles for H2A.Z and its acetylation in GAL1 transcription and gene induction, but not GAL1-transcriptional memory

31 March 2020

1 reference

A combination of H2A.Z and H4 acetylation recruits Brd2 to chromatin during transcriptional activation

31 March 2020

1 reference

H3.3 actively marks enhancers and primes gene transcription via opening higher-ordered chromatin.

31 March 2020

1 reference

The selection and function of cell type-specific enhancers

31 March 2020

1 reference

Changes in H2A.Z occupancy and DNA methylation during B-cell lymphomagenesis

31 March 2020

1 reference

Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks

31 March 2020

1 reference

Placing the HIRA histone chaperone complex in the chromatin landscape.

31 March 2020

1 reference

Nucleosome remodeling induced by RNA polymerase II: loss of the H2A/H2B dimer during transcription.

31 March 2020

1 reference

Mechanism of chromatin remodeling and recovery during passage of RNA polymerase II.

31 March 2020

1 reference

FACT facilitates transcription-dependent nucleosome alteration

31 March 2020

1 reference

Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II

31 March 2020

1 reference

Histone chaperone FACT action during transcription through chromatin by RNA polymerase II

31 March 2020

1 reference

WHSC1 links transcription elongation to HIRA-mediated histone H3.3 deposition

31 March 2020

1 reference

Mechanism of transcription through a nucleosome by RNA polymerase II

31 March 2020

1 reference

H2B ubiquitylation plays a role in nucleosome dynamics during transcription elongation

31 March 2020

1 reference

Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation

31 March 2020

1 reference

Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome

31 March 2020

1 reference

In vivo effects of histone H3 depletion on nucleosome occupancy and position in Saccharomyces cerevisiae

31 March 2020

1 reference

The Iws1:Spt6:CTD complex controls cotranscriptional mRNA biosynthesis and HYPB/Setd2-mediated histone H3K36 methylation

31 March 2020

1 reference

Chromatin remodelers Isw1 and Chd1 maintain chromatin structure during transcription by preventing histone exchange

31 March 2020

1 reference

Histone chaperone FACT coordinates nucleosome interaction through multiple synergistic binding events

31 March 2020

1 reference

Histone methyltransferase SETD2 coordinates FACT recruitment with nucleosome dynamics during transcription

31 March 2020

1 reference

Histone H3 lysine 36 methylation targets the Isw1b remodeling complex to chromatin

31 March 2020

1 reference

A key role for Chd1 in histone H3 dynamics at the 3' ends of long genes in yeast

31 March 2020

1 reference

Chd1 chromatin remodelers maintain nucleosome organization and repress cryptic transcription.

31 March 2020

1 reference

Codependency of H2B monoubiquitination and nucleosome reassembly on Chd1.

31 March 2020

1 reference

Genome-wide function of H2B ubiquitylation in promoter and genic regions

31 March 2020

1 reference

Phosphorylated Pol II CTD recruits multiple HDACs, including Rpd3C(S), for methylation-dependent deacetylation of ORF nucleosomes

31 March 2020

1 reference

Distinct factors control histone variant H3.3 localization at specific genomic regions

31 March 2020

1 reference

Histone H3.3 variant dynamics in the germline of Caenorhabditis elegans

31 March 2020

1 reference

Marking histone H3 variants: how, when and why?

31 March 2020

1 reference

ZMYND11 links histone H3.3K36me3 to transcription elongation and tumour suppression

31 March 2020

1 reference

BS69/ZMYND11 reads and connects histone H3.3 lysine 36 trimethylation-decorated chromatin to regulated pre-mRNA processing

31 March 2020

1 reference

ZMYND11: an H3.3-specific reader of H3K36me3.

31 March 2020

1 reference

A novel mammalian complex containing Sin3B mitigates histone acetylation and RNA polymerase II progression within transcribed loci

31 March 2020

1 reference

Sequence requirements for combinatorial recognition of histone H3 by the MRG15 and Pf1 subunits of the Rpd3S/Sin3S corepressor complex

31 March 2020

1 reference

Combined Action of PHD and Chromo Domains Directs the Rpd3S HDAC to Transcribed Chromatin

31 March 2020

1 reference

Non-coding RNAs in human disease

31 March 2020

1 reference

The expression level of small non-coding RNAs derived from the first exon of protein-coding genes is predictive of cancer status.

31 March 2020

1 reference

PfSETvs methylation of histone H3K36 represses virulence genes in Plasmodium falciparum

31 March 2020

1 reference

Regulation of alternative splicing by histone modifications

31 March 2020

1 reference

Psip1/Ledgf p52 binds methylated histone H3K36 and splicing factors and contributes to the regulation of alternative splicing

31 March 2020

1 reference

Epigenetics in alternative pre-mRNA splicing

31 March 2020

1 reference

Differential chromatin marking of introns and expressed exons by H3K36me3.

31 March 2020

1 reference

Genetic analysis of the repetitive carboxyl-terminal domain of the largest subunit of mouse RNA polymerase II

31 March 2020

1 reference

Growth retardation and neonatal lethality in mice with a homozygous deletion in the C-terminal domain of RNA polymerase II.

31 March 2020

1 reference

The RNA polymerase II CTD coordinates transcription and RNA processing.

31 March 2020

1 reference

Dynamic phosphorylation patterns of RNA polymerase II CTD during transcription

31 March 2020

1 reference

Capturing the dynamic epigenome

31 March 2020

1 reference

Kinetics of core histones in living human cells: little exchange of H3 and H4 and some rapid exchange of H2B.

31 March 2020

1 reference

Visualizing chromatin dynamics in intact cells.

31 March 2020

1 reference

Dynamic binding of histone H1 to chromatin in living cells

31 March 2020

1 reference

Dynamics of histone H3 deposition in vivo reveal a nucleosome gap-filling mechanism for H3.3 to maintain chromatin integrity.

31 March 2020

1 reference

Recombination-induced tag exchange to track old and new proteins

31 March 2020

1 reference

Partitioning of histone H3-H4 tetramers during DNA replication-dependent chromatin assembly

31 March 2020

1 reference

Kinetics of re-establishing H3K79 methylation marks in global human chromatin.

31 March 2020

1 reference

Recognizing methylated histone variant H3.3 to prevent tumors

31 March 2020

1 reference

Phosphorylation of H4 Ser 47 promotes HIRA-mediated nucleosome assembly.

31 March 2020

1 reference

The Rtt106 histone chaperone is functionally linked to transcription elongation and is involved in the regulation of spurious transcription from cryptic promoters in yeast

31 March 2020

1 reference

Anp32e, a higher eukaryotic histone chaperone directs preferential recognition for H2A.Z

31 March 2020

1 reference

Stepwise assembly of chromatin during DNA replication in vitro

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25650798

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Nap1 and Chz1 have separate Htz1 nuclear import and assembly functions

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25650798

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NRM3941

1 reference

PubMed ID

25650798

Dimensions Publication ID

2 September 2017

0 references

1 reference

PubMed ID

25650798