(Q38553323)

4 September 2017

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title

Conifer genomics and adaptation: at the crossroads of genetic diversity and genome function (English)

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4 September 2017

1 reference

1 reference

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26206592%20AND%20SRC:MED&resulttype=core&format=json

14 June 2020

John MacKay

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26206592%20AND%20SRC:MED&resulttype=core&format=json

14 June 2020

author name string

Julien Prunier

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26206592%20AND%20SRC:MED&resulttype=core&format=json

14 June 2020

language of work or name

English

0 references

publication date

22 July 2015

1 reference

4 September 2017

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26206592%20AND%20SRC:MED&resulttype=core&format=json

14 June 2020

volume

209

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26206592%20AND%20SRC:MED&resulttype=core&format=json

14 June 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26206592%20AND%20SRC:MED&resulttype=core&format=json

14 June 2020

page(s)

44-62

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26206592%20AND%20SRC:MED&resulttype=core&format=json

Genomic organization of molecular differentiation in Norway spruce (Picea abies).

14 June 2020

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21 January 2018

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Nucleotide diversity and linkage disequilibrium in loblolly pine

21 January 2018

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21 January 2018

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Slow but not low: genomic comparisons reveal slower evolutionary rate and higher dN/dS in conifers compared to angiosperms

21 January 2018

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What do we need to know about speciation?

21 January 2018

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The transcriptomics of secondary growth and wood formation in conifers

21 January 2018

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Extensive copy-number variation of young genes across stickleback populations

21 January 2018

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High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination

21 January 2018

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The genetics of inbreeding depression

21 January 2018

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Sequencing of the needle transcriptome from Norway spruce (Picea abies Karst L.) reveals lower substitution rates, but similar selective constraints in gymnosperms and angiosperms

21 January 2018

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21 January 2018

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21 January 2018

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Conifers have a unique small RNA silencing signature

21 January 2018

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Large-scale screening of transcription factor-promoter interactions in spruce reveals a transcriptional network involved in vascular development

21 January 2018

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Association genetics of coastal Douglas fir (Pseudotsuga menziesii var. menziesii, Pinaceae). I. Cold-hardiness related traits

21 January 2018

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21 January 2018

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Evaluating the role of natural selection in the evolution of gene regulation.

21 January 2018

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21 January 2018

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21 January 2018

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MADS goes genomic in conifers: towards determining the ancestral set of MADS-box genes in seed plants

21 January 2018

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The evolutionary implications of knox-I gene duplications in conifers: correlated evidence from phylogeny, gene mapping, and analysis of functional divergence

21 January 2018

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An integrated genomic, proteomic and biochemical analysis of (+)-3-carene biosynthesis in Sitka spruce (Picea sitchensis) genotypes that are resistant or susceptible to white pine weevil

21 January 2018

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Potential effects of climate change on ecosystem and tree species distribution in British Columbia

21 January 2018

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Global monitoring of autumn gene expression within and among phenotypically divergent populations of Sitka spruce (Picea sitchensis).

21 January 2018

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Widespread, ecologically relevant genetic markers developed from association mapping of climate-related traits in Sitka spruce (Picea sitchensis).

21 January 2018

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A comparison of four methods for detecting weak genetic structure from marker data

21 January 2018

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Evolutionary significance of gene expression divergence

21 January 2018

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Transcriptome mining, functional characterization, and phylogeny of a large terpene synthase gene family in spruce (Picea spp.).

21 January 2018

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21 January 2018

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Evolution at two levels in humans and chimpanzees

21 January 2018

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Apparent homology of expressed genes from wood-forming tissues of loblolly pine (Pinus taeda L.) with Arabidopsis thaliana

21 January 2018

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Comparing EST-based genetic maps between Pinus sylvestris and Pinus taeda.

21 January 2018

1 reference

The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences

21 January 2018

1 reference

Recent progress in reconstructing angiosperm phylogeny.

21 January 2018

1 reference

Natural variation in abiotic stress responsive gene expression and local adaptation to climate in Arabidopsis thaliana

21 January 2018

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The genetic differentiation at quantitative trait loci under local adaptation.

21 January 2018

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The evolution and adaptive potential of transcriptional variation in sticklebacks--signatures of selection and widespread heritability.

21 January 2018

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RECENT EVOLUTION AND DIVERGENCE AMONG POPULATIONS OF A RARE MEXICAN ENDEMIC, CHIHUAHUA SPRUCE, FOLLOWING HOLOCENE CLIMATIC WARMING.

21 January 2018

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Ecological and genetic factors linked to contrasting genome dynamics in seed plants

21 January 2018

1 reference

Dominance and the evolutionary accumulation of cis- and trans-effects on gene expression

21 January 2018

1 reference

Transcriptome profiling of Pinus radiata juvenile wood with contrasting stiffness identifies putative candidate genes involved in microfibril orientation and cell wall mechanics

21 January 2018

1 reference

Transcriptome analysis of Pinus monticola primary needles by RNA-seq provides novel insight into host resistance to Cronartium ribicola

21 January 2018

1 reference

The contribution of transposable elements to expressed coding sequence in Arabidopsis thaliana

21 January 2018

1 reference

Microarray analysis and scale-free gene networks identify candidate regulators in drought-stressed roots of loblolly pine (P. taeda L.).

21 January 2018

1 reference

Towards decoding the conifer giga-genome

21 January 2018

1 reference

Inheritance, gene expression, and lignin characterization in a mutant pine deficient in cinnamyl alcohol dehydrogenase

21 January 2018

1 reference

Adventures in the enormous: a 1.8 million clone BAC library for the 21.7 Gb genome of loblolly pine

21 January 2018

1 reference

Expression of the β-glucosidase gene Pgβglu-1 underpins natural resistance of white spruce against spruce budworm

21 January 2018

1 reference

De novo characterization of Larix gmelinii (Rupr.) Rupr. transcriptome and analysis of its gene expression induced by jasmonates

21 January 2018

1 reference

Plant genome size variation: bloating and purging DNA.

21 January 2018

1 reference

Transcriptome sequencing and profiling of expressed genes in cambial zone and differentiating xylem of Japanese cedar (Cryptomeria japonica).

21 January 2018

1 reference

Evolution of genome size and complexity in Pinus

21 January 2018

1 reference

Population genomics of parallel hybrid zones in the mimetic butterflies, H. melpomene and H. erato

21 January 2018

1 reference

Three loblolly pine CesA genes expressed in developing xylem are orthologous to secondary cell wall CesA genes of angiosperms.

21 January 2018

1 reference

Scanning the genome for gene single nucleotide polymorphisms involved in adaptive population differentiation in white spruce

21 January 2018

1 reference

Molecular evolution of regulatory genes in spruces from different species and continents: heterogeneous patterns of linkage disequilibrium and selection but correlated recent demographic changes

21 January 2018

1 reference

Forest tree genomics: growing resources and applications

21 January 2018

1 reference

Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies

21 January 2018

1 reference

A high-density gene map of loblolly pine (Pinus taeda L.) based on exome sequence capture genotyping

21 January 2018

1 reference

Divergent selection and heterogeneous genomic divergence

21 January 2018

1 reference

The genes underlying the process of speciation

21 January 2018

1 reference

The Norway spruce genome sequence and conifer genome evolution

21 January 2018

1 reference

Plasticity of maritime pine (Pinus pinaster) wood-forming tissues during a growing season.

21 January 2018

1 reference

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

21 January 2018

1 reference

Development of high-density SNP genotyping arrays for white spruce (Picea glauca) and transferability to subtropical and nordic congeners

21 January 2018

1 reference

The heterogeneous levels of linkage disequilibrium in white spruce genes and comparative analysis with other conifers

21 January 2018

1 reference

A spruce gene map infers ancient plant genome reshuffling and subsequent slow evolution in the gymnosperm lineage leading to extant conifers

21 January 2018

1 reference

QTL mapping in white spruce: gene maps and genomic regions underlying adaptive traits across pedigrees, years and environments

21 January 2018

1 reference

Parallel and lineage-specific molecular adaptation to climate in boreal black spruce

21 January 2018

1 reference

Temperature-driven range expansion of an irruptive insect heightened by weakly coevolved plant defenses

21 January 2018

1 reference

Transcriptome profiling in conifers and the PiceaGenExpress database show patterns of diversification within gene families and interspecific conservation in vascular gene expression

21 January 2018

1 reference

Modular organization of the white spruce (Picea glauca) transcriptome reveals functional organization and evolutionary signatures

21 January 2018

1 reference

Clone history shapes Populus drought responses

21 January 2018

1 reference

Conifer defence against insects: microarray gene expression profiling of Sitka spruce (Picea sitchensis) induced by mechanical wounding or feeding by spruce budworms (Choristoneura occidentalis) or white pine weevils (Pissodes strobi) reveals large-

21 January 2018

1 reference

Genomic islands of divergence are not affected by geography of speciation in sunflowers

21 January 2018

1 reference

Selection at linked sites shapes heritable phenotypic variation in C. elegans

21 January 2018

1 reference

Relating CNVs to transcriptome data at fine resolution: assessment of the effect of variant size, type, and overlap with functional regions

21 January 2018

1 reference

Transgenerational epigenetic instability is a source of novel methylation variants

21 January 2018

1 reference

Evolution of gene structure in the conifer Picea glauca: a comparative analysis of the impact of intron size

21 January 2018

1 reference

ABySS: a parallel assembler for short read sequence data

21 January 2018

1 reference

The population genomics of plant adaptation.

21 January 2018

1 reference

A conifer genome spruces up plant phylogenomics

21 January 2018

1 reference

Using genome scans of DNA polymorphism to infer adaptive population divergence

21 January 2018

1 reference

Evidence of widespread selection on standing variation in Europe at height-associated SNPs

21 January 2018

1 reference

Genomic islands of speciation in Anopheles gambiae

21 January 2018

1 reference

Global transcriptome analysis of constitutive resistance to the white pine weevil in spruce

21 January 2018

1 reference

Are long-lived trees poised for evolutionary change? Single locus effects in the evolution of gene expression networks in spruce.

21 January 2018

1 reference

Reprogramming of gene expression during compression wood formation in pine: coordinated modulation of S-adenosylmethionine, lignin and lignan related genes.

21 January 2018

1 reference

Increased genetic divergence between two closely related fir species in areas of range overlap

21 January 2018

1 reference

Transcriptome characteristics and six alternative expressed genes positively correlated with the phase transition of annual cambial activities in Chinese Fir (Cunninghamia lanceolata (Lamb.) Hook).

21 January 2018

1 reference

Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism

21 January 2018

1 reference

Unique features of the loblolly pine (Pinus taeda L.) megagenome revealed through sequence annotation

21 January 2018

1 reference

Neutral and adaptive variation in gene expression

21 January 2018

1 reference

The evolutionary significance of cis-regulatory mutations

21 January 2018

1 reference

Differential gene expression related to an epigenetic memory affecting climatic adaptation in Norway spruce

21 January 2018

1 reference

MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce

21 January 2018

1 reference

Seasonal variation in gene expression for loblolly pines (Pinus taeda) from different geographical regions

21 January 2018

1 reference

Human expression QTLs are enriched in signals of environmental adaptation

21 January 2018

1 reference

Genomic rearrangements and the evolution of clusters of locally adaptive loci.

21 January 2018

1 reference

Conservation and divergence of gene expression plasticity following c. 140 million years of evolution in lodgepole pine (Pinus contorta) and interior spruce (Picea glauca×Picea engelmannii).

21 January 2018

1 reference

Genetic architecture of regulatory variation in Arabidopsis thaliana

21 January 2018

1 reference

Evolutionary conservation of the transcriptional network regulating secondary cell wall biosynthesis

21 January 2018

1 reference

Sequencing and assembly of the 22-gb loblolly pine genome

21 January 2018

1 reference

The MaSuRCA genome assembler

21 January 2018

1 reference

Climate change may cause severe loss in the economic value of European forest land

21 January 2018

1 reference

Seedling establishment of a boreal tree species (Pinus sylvestris) at its southernmost distribution limit: consequences of being in a marginal Mediterranean habitat

21 January 2018

1 reference

21 January 2018

1 reference

21 January 2018

The family tree flowers

1 reference

Heterologous hybridisation to a Pinus microarray: profiling of gene expression in Pinus radiata saplings exposed to ethephon

21 January 2018

1 reference