(Q38391092)

2 September 2017

1 reference

title

SNP genotyping and population genomics from expressed sequences - current advances and future possibilities (English)

1 reference

2 September 2017

0 references

3

Stephen R Palumbi

1 reference

2 September 2017

2

Melissa H Pespeni

1 reference

2 September 2017

Pierre De Wit

1

1 reference

2 September 2017

20 April 2015

1 reference

2 September 2017

1 reference

2 September 2017

24

1 reference

2 September 2017

10

1 reference

2 September 2017

2310-2323

1 reference

Assembly and annotation of a non-model gastropod (Nerita melanotragus) transcriptome: a comparison of de novo assemblers

2 September 2017

1 reference

Patterns of transcriptome divergence in the male accessory gland of two closely related species of field crickets.

21 January 2018

1 reference

LOSITAN: a workbench to detect molecular adaptation based on a Fst-outlier method

21 January 2018

1 reference

De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes.

21 January 2018

1 reference

Transcriptomic signatures of ash (Fraxinus spp.) phloem

21 January 2018

1 reference

Genomic basis for coral resilience to climate change

21 January 2018

1 reference

Multilocus adaptation associated with heat resistance in reef-building corals

21 January 2018

1 reference

A strand-specific library preparation protocol for RNA sequencing

21 January 2018

1 reference

Reference-free transcriptome assembly in non-model animals from next-generation sequencing data.

21 January 2018

1 reference

Population and sex differences in Drosophila melanogaster brain gene expression

21 January 2018

1 reference

De novo analysis of transcriptome dynamics in the migratory locust during the development of phase traits

21 January 2018

1 reference

Genetic diagnosis by whole exome capture and massively parallel DNA sequencing

21 January 2018

1 reference

SNP discovery from transcriptome of the swimbladder of Takifugu rubripes

21 January 2018

1 reference

Transcriptome-wide polymorphisms of red abalone (Haliotis rufescens) reveal patterns of gene flow and local adaptation

21 January 2018

1 reference

Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data

21 January 2018

1 reference

A framework for variation discovery and genotyping using next-generation DNA sequencing data

21 January 2018

1 reference

Low-coverage MiSeq next generation sequencing reveals the mitochondrial genome of the Eastern Rock Lobster, Sagmariasus verreauxi

21 January 2018

1 reference

Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

21 January 2018

1 reference

A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective

21 January 2018

1 reference

Mitochondrial DNA evolution in experimental populations of Drosophila subobscura

21 January 2018

1 reference

A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly.

21 January 2018

1 reference

Coevolution of gene expression among interacting proteins

21 January 2018

1 reference

Evidence for widespread adaptive evolution of gene expression in budding yeast

21 January 2018

1 reference

The genetic consequences of spatially varying selection in the panmictic American eel (Anguilla rostrata).

21 January 2018

1 reference

Reference-free population genomics from next-generation transcriptome data and the vertebrate-invertebrate gap

21 January 2018

1 reference

Full-length transcriptome assembly from RNA-Seq data without a reference genome

21 January 2018

1 reference

Fast pairwise IBD association testing in genome-wide association studies

21 January 2018

1 reference

Characterizing bias in population genetic inferences from low-coverage sequencing data

21 January 2018

1 reference

Associative transcriptomics of traits in the polyploid crop species Brassica napus.

21 January 2018

1 reference

SNP discovery using Next Generation Transcriptomic Sequencing in Atlantic herring (Clupea harengus)

21 January 2018

1 reference

Non-genetic heterogeneity from stochastic partitioning at cell division

21 January 2018

1 reference

The genomic basis of adaptive evolution in threespine sticklebacks

21 January 2018

1 reference

Estimation of allele frequency and association mapping using next-generation sequencing data

21 January 2018

1 reference

Sequencing of pooled DNA samples (Pool-Seq) uncovers complex dynamics of transposable element insertions in Drosophila melanogaster

21 January 2018

1 reference

Accuracy of allele frequency estimation using pooled RNA-Seq

21 January 2018

1 reference

Hybrid error correction and de novo assembly of single-molecule sequencing reads

21 January 2018

1 reference

Separating homeologs by phasing in the tetraploid wheat transcriptome

21 January 2018

1 reference

The genetic differentiation at quantitative trait loci under local adaptation.

21 January 2018

1 reference

The evolution and adaptive potential of transcriptional variation in sticklebacks--signatures of selection and widespread heritability.

21 January 2018

1 reference

Multiple instances of ancient balancing selection shared between humans and chimpanzees

21 January 2018

1 reference

Transcriptome-wide comparison of sequence variation in divergent ecotypes of kokanee salmon

21 January 2018

1 reference

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

21 January 2018

1 reference

The Sequence Alignment/Map format and SAMtools

21 January 2018

1 reference

Environmental selection on transcriptome-derived SNPs in a high gene flow marine fish, the Atlantic herring (Clupea harengus).

21 January 2018

1 reference

BSTA: a targeted approach combines bulked segregant analysis with next- generation sequencing and de novo transcriptome assembly for SNP discovery in sunflower.

21 January 2018

1 reference

Population genomics of the endangered giant Galápagos tortoise

21 January 2018

1 reference

Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation

21 January 2018

1 reference

Evaluation of demographic history and neutral parameterization on the performance of FST outlier tests

21 January 2018

1 reference

Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads

21 January 2018

1 reference

Improving transcriptome assembly through error correction of high-throughput sequence reads

21 January 2018

1 reference

Perspectives on the use of landscape genetics to detect genetic adaptive variation in the field

21 January 2018

1 reference

Next-generation transcriptome assembly

21 January 2018

1 reference

Host adaptation to viruses relies on few genes with different cross-resistance properties

21 January 2018

1 reference

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

21 January 2018

1 reference

SNP discovery in European anchovy (Engraulis encrasicolus, L) by high-throughput transcriptome and genome sequencing

21 January 2018

1 reference

Transcriptome genetics using second generation sequencing in a Caucasian population

21 January 2018

1 reference

Comparison of F(ST) outlier tests for SNP loci under selection.

21 January 2018

1 reference

Genotype and SNP calling from next-generation sequencing data

21 January 2018

1 reference

SNP calling, genotype calling, and sample allele frequency estimation from New-Generation Sequencing data

21 January 2018

1 reference

Assessing De Novo transcriptome assembly metrics for consistency and utility

21 January 2018

1 reference

Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing.

21 January 2018

1 reference

CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes

21 January 2018

1 reference

Signals of selection in outlier loci in a widely dispersing species across an environmental mosaic

21 January 2018

1 reference

Restriction Site Tiling Analysis: accurate discovery and quantitative genotyping of genome-wide polymorphisms using nucleotide arrays

21 January 2018

1 reference

Signs of adaptation to local pH conditions across an environmental mosaic in the California Current Ecosystem

21 January 2018

1 reference

Evolutionary change during experimental ocean acidification

21 January 2018

1 reference

Understanding mechanisms underlying human gene expression variation with RNA sequencing

21 January 2018

1 reference

Automatic clustering of orthologs and in-paralogs from pairwise species comparisons

21 January 2018

1 reference

SNP signatures of selection on standing genetic variation and their association with adaptive phenotypes along gradients of ecological speciation in lake whitefish species pairs (Coregonus spp.).

21 January 2018

1 reference

Comparative population genomics in animals uncovers the determinants of genetic diversity.

21 January 2018

1 reference

Characterizing and measuring bias in sequence data

21 January 2018

1 reference

GAGE: A critical evaluation of genome assemblies and assembly algorithms

21 January 2018

1 reference

Ecological genomics of local adaptation

21 January 2018

1 reference

Sequencing pools of individuals — mining genome-wide polymorphism data without big funding

21 January 2018

1 reference

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

21 January 2018

1 reference

A powerful and flexible statistical framework for testing hypotheses of allele-specific gene expression from RNA-seq data

21 January 2018

1 reference

A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

21 January 2018

1 reference

Integrated mRNA and microRNA transcriptome sequencing characterizes sequence variants and mRNA-microRNA regulatory network in nasopharyngeal carcinoma model systems

21 January 2018

1 reference

The COG database: an updated version includes eukaryotes

21 January 2018

1 reference

Exome sequencing: the sweet spot before whole genomes

21 January 2018

1 reference

The population genomics of a fast evolver: high levels of diversity, functional constraint, and molecular adaptation in the tunicate Ciona intestinalis

21 January 2018

1 reference

Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences

21 January 2018

1 reference

SNP discovery and High Resolution Melting Analysis from massive transcriptome sequencing in the California red abalone Haliotis rufescens.

21 January 2018

1 reference

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing.

21 January 2018

1 reference

Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive in silico assessment of RNA-seq experiments

21 January 2018

1 reference

Alternative isoform regulation in human tissue transcriptomes

21 January 2018

1 reference

RNA-Seq: a revolutionary tool for transcriptomics

21 January 2018

1 reference

Global eQTL mapping reveals the complex genetic architecture of transcript-level variation in Arabidopsis

21 January 2018

1 reference

High-resolution genotyping by amplicon melting analysis using LCGreen

21 January 2018

1 reference

Reptile: representative tiling for short read error correction.

21 January 2018

1 reference

GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis

21 January 2018

1 reference

Brain expression genome-wide association study (eGWAS) identifies human disease-associated variants

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1111/MEC.13165

1 reference

2 September 2017

1 reference

PubMed ID

25808983