(Q38603466)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28851273%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

title

EL_PSSM-RT: DNA-binding residue prediction by integrating ensemble learning with PSSM Relation Transformation (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28851273%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

1 reference

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28851273%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

author name string

Jiyun Zhou

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28851273%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Qin Lu

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28851273%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Yulan He

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28851273%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Hongpeng Wang

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28851273%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

language of work or name

1 reference

29 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28851273%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28851273%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

volume

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28851273%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28851273%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

page(s)

379

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28851273%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1186/s12859-017-1792-8

28 March 2020

exact match

0 references

cites work

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6 September 2017

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6 September 2017

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6 September 2017

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Using amino acid physicochemical distance transformation for fast protein remote homology detection

6 September 2017

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6 September 2017

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Prediction of lysine ubiquitylation with ensemble classifier and feature selection

6 September 2017

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6 September 2017

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6 September 2017

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Prediction of DNA-binding residues from protein sequence information using random forests

6 September 2017

1 reference

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PEDANT covers all complete RefSeq genomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

Identification of DNA-binding proteins using support vector machines and evolutionary profiles

6 September 2017

1 reference

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6 September 2017

1 reference

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Application of the EIIP/ISM bioinformatics concept in development of new drugs

6 September 2017

1 reference

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DP-Bind: a web server for sequence-based prediction of DNA-binding residues in DNA-binding proteins

6 September 2017

1 reference

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Improving the accuracy of transmembrane protein topology prediction using evolutionary information

6 September 2017

1 reference

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BindN: a web-based tool for efficient prediction of DNA and RNA binding sites in amino acid sequences.

6 September 2017

1 reference

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Prediction of RNA binding sites in proteins from amino acid sequence

6 September 2017

1 reference

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Prediction of protein subcellular localization

6 September 2017

1 reference

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Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

6 September 2017

1 reference

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Predicting DNA-binding sites of proteins from amino acid sequence

6 September 2017

1 reference

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Efficient prediction of nucleic acid binding function from low-resolution protein structures.

6 September 2017

1 reference

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Linear regression models for solvent accessibility prediction in proteins.

6 September 2017

1 reference

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Combining prediction of secondary structure and solvent accessibility in proteins

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

PSSM-based prediction of DNA binding sites in proteins

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

Accurate prediction of solvent accessibility using neural networks-based regression.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

Using structural motif templates to identify proteins with DNA binding function

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

Rescuing the function of mutant p53.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

Clustering of highly homologous sequences to reduce the size of large protein databases

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

An overview of the structures of protein-DNA complexes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

The PSIPRED protein structure prediction server

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

6 September 2017

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1 reference

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Structure-based prediction of DNA target sites by regulatory proteins.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

SMART: identification and annotation of domains from signalling and extracellular protein sequences

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

Arginine (348) is a major determinant of the DNA binding specificity of transcription factor E12.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

CATH--a hierarchic classification of protein domain structures

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

Measuring the accuracy of diagnostic systems

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

Rapid and sensitive protein similarity searches

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

Quantitative parameters for amino acid-base interaction: implications for prediction of protein-DNA binding sites

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

Residue-level prediction of DNA-binding sites and its application on DNA-binding protein predictions.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

DISPLAR: an accurate method for predicting DNA-binding sites on protein surfaces

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

Protein-DNA interactions: A structural analysis

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

Identification of DNA-binding proteins by incorporating evolutionary information into pseudo amino acid composition via the top-n-gram approach

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

PreDNA: accurate prediction of DNA-binding sites in proteins by integrating sequence and geometric structure information.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

Sequence-based prediction of DNA-binding residues in proteins with conservation and correlation information.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

Prediction of mitochondrial proteins of malaria parasite using split amino acid composition and PSSM profile.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

Structure Based Prediction of Binding Residues on DNA-binding Proteins.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

Design of accurate predictors for DNA-binding sites in proteins using hybrid SVM-PSSM method.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

Prediction of DNA-binding residues from sequence features.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

Using evolutionary and structural information to predict DNA-binding sites on DNA-binding proteins

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

Structure-based prediction of DNA-binding sites on proteins using the empirical preference of electrostatic potential and the shape of molecular surfaces

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

Protein-DNA interactions: amino acid conservation and the effects of mutations on binding specificity

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5576297

Sequence clustering strategies improve remote homology recognitions while reducing search times

31 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12859-017-1792-8

The use of the area under the ROC curve in the evaluation of machine learning algorithms

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12859-017-1792-8

The overall Wiener index--a new tool for characterization of molecular topology

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28851273

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12859-017-1792-8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28851273%20AND%20SRC:MED&resulttype=core&format=json

journals/bmcbi/ZhouLXHW17

28 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28851273%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

PubMed publication ID

28851273

1 reference