(Q38614360)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

title

An integrated expression atlas of miRNAs and their promoters in human and mouse (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Magda Babina

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Nicolas Bertin

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Carsten O Daub

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Vsevolod Makeev

36

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Anthony Mathelier

37

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Yulia Medvedeva

38

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Pål Sætrom

47

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Hideya Kawaji

64

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Michael Detmar

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Ruslan Deviatiiarov

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Jayson Harshbarger

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Peter Heutink

24

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Chung Chau Hon

26

1 reference

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28 March 2020

Takeya Kasukawa

30

1 reference

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28 March 2020

Timo Lassmann

32

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Marina Lizio

35

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Helena Persson

44

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Filip Roudnicky

46

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Louise Winteringham

55

1 reference

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28 March 2020

Christine A Wells

62

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Kim M Summers

63

1 reference

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28 March 2020

Albin Sandelin

65

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Piero Carninci

69

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Alistair Forrest

70

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Christopher J. Mungall

40

object named as

Christopher J Mungall

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

5

Peter Arner

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

50

Jay W Shin

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Yoshihide Hayashizaki

68

object named as

Yoshihide Hayashizaki

1 reference

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28 March 2020

41

Shohei Noma

1 reference

28 March 2020

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28

Yuri Ishizu

1 reference

28 March 2020

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

49

Jessica Severin

1 reference

28 March 2020

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45

Patrizia Rizzu

1 reference

28 March 2020

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

66

Michael Rehli

1 reference

28 March 2020

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

57

Kayoko Yasuzawa

1 reference

28 March 2020

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

Mariko Okada-Hatakeyama

43

object named as

Mariko Okada-Hatakeyama

1 reference

28 March 2020

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

Derek de Rie

1

1 reference

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28 March 2020

Erik Arner

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Haitham Ashoor

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Gaby Åström

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

A Maxwell Burroughs

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Ailsa J Carlisle

11

1 reference

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28 March 2020

Alexandre Fort

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Claudia Gebhard

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Daniel Goldowitz

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Sven Guhl

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Thomas J Ha

19

1 reference

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28 March 2020

Akira Hasegawa

21

1 reference

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28 March 2020

Kosuke Hashimoto

22

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Kelly J Hitchens

25

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Edward Huang

27

1 reference

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28 March 2020

Chieko Kai

29

1 reference

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28 March 2020

Peter Klinken

31

1 reference

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28 March 2020

Charles-Henri Lecellier

33

1 reference

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28 March 2020

Weonju Lee

34

1 reference

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28 March 2020

Niklas Mejhert

39

1 reference

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28 March 2020

Mitsuhiro Ohshima

42

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Hiroki Sato

48

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Rolf K Swoboda

51

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Hiroshi Tarui

52

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Hiroo Toyoda

53

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Yoko Yamaguchi

56

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Misako Yoneda

58

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Noriko Yumoto

59

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Susan Zabierowski

60

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Peter G Zhang

61

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

FANTOM Consortium

67

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Michiel J L de Hoon

71

1 reference

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28 March 2020

Tanvir Alam

3

1 reference

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28 March 2020

Meenhard Herlyn

23

1 reference

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28 March 2020

Kristoffer Vitting-Seerup

54

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

publication date

21 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

number of pages

7

0 references

published in

Nature Biotechnology

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

volume

35

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

issue

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

page(s)

872-878

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1038/nbt.3947

28 March 2020

exact match

0 references

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MicroRNA-345 induces apoptosis in pancreatic cancer cells through potentiation of caspase-dependent and -independent pathways

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23 June 2018

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23 June 2018

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23 June 2018

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23 June 2018

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23 June 2018

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23 June 2018

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High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Site-specific DICER and DROSHA RNA products control the DNA-damage response

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

MicroRNA profiling: approaches and considerations

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

MicroRNAs in stress signaling and human disease

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

5' end-centered expression profiling using cap-analysis gene expression and next-generation sequencing

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

23 June 2018

ViennaRNA Package 2.0

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Identifying transcriptional start sites of human microRNAs based on high-throughput sequencing data

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Mirtrons: microRNA biogenesis via splicing

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Unamplified cap analysis of gene expression on a single-molecule sequencer.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Logical development of the cell ontology

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Differential expression analysis for sequence count data

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

TagDust--a program to eliminate artifacts from next generation sequencing data

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Fast and accurate short read alignment with Burrows-Wheeler transform

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Construction, visualisation, and clustering of transcription networks from microarray expression data

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

A mammalian microRNA expression atlas based on small RNA library sequencing

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

RNA maps reveal new RNA classes and a possible function for pervasive transcription

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Non-coding RNAs: lessons from the small nuclear and small nucleolar RNAs

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

The transcriptional landscape of the mammalian genome

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

MicroRNAs: genomics, biogenesis, mechanism, and function

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

BLAT—The BLAST-Like Alignment Tool

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

T-Coffee: A novel method for fast and accurate multiple sequence alignment

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Roles for noncoding RNAs in cell-fate determination and regeneration

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

miR-153 supports colorectal cancer progression via pleiotropic effects that enhance invasion and chemotherapeutic resistance

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

miR-200b and miR-429 function in mouse ovulation and are essential for female fertility.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Mincle polarizes human monocyte and neutrophil responses to Candida albicans.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

MotEvo: integrated Bayesian probabilistic methods for inferring regulatory sites and motifs on multiple alignments of DNA sequences.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Tiny RNAs associated with transcription start sites in animals.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

Biogenic mechanisms and utilization of small RNAs derived from human protein-coding genes

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5767576

3 December 2018

Identifiers

DOI

10.1038/NBT.3947

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829439%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

1 reference