(Q38627903)

English

The Paf1 complex represses SER3 transcription in Saccharomyces cerevisiae by facilitating intergenic transcription-dependent nucleosome occupancy of the SER3 promoter

scientific article published on 26 August 2011

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

4 September 2017

The Paf1 complex represses SER3 transcription in Saccharomyces cerevisiae by facilitating intergenic transcription-dependent nucleosome occupancy of the SER3 promoter (English)

1 reference

Europe PubMed Central

PMC publication ID

4 September 2017

Saccharomyces cerevisiae

1 reference

based on heuristic

inferred from title

author name string

Justin A Pruneski

1

1 reference

Europe PubMed Central

PMC publication ID

4 September 2017

Sarah J Hainer

2

1 reference

Europe PubMed Central

PMC publication ID

4 September 2017

Kostadin O Petrov

3

1 reference

Europe PubMed Central

PMC publication ID

4 September 2017

Joseph A Martens

4

1 reference

Europe PubMed Central

PMC publication ID

4 September 2017

publication date

26 August 2011

1 reference

Europe PubMed Central

PMC publication ID

4 September 2017

Eukaryotic Cell

1 reference

Europe PubMed Central

PMC publication ID

4 September 2017

10

1 reference

Europe PubMed Central

PMC publication ID

4 September 2017

10

1 reference

Europe PubMed Central

PMC publication ID

4 September 2017

1283-1294

1 reference

Europe PubMed Central

PMC publication ID

4 September 2017

Identification of histone mutants that are defective for transcription-coupled nucleosome occupancy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

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Identification of a role for histone H2B ubiquitylation in noncoding RNA 3'-end formation through mutational analysis of Rtf1 in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

6 September 2017

Intergenic transcription causes repression by directing nucleosome assembly

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

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Noncanonical Tandem SH2 Enables Interaction of Elongation Factor Spt6 with RNA Polymerase II

1 reference

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A Tandem SH2 Domain in Transcription Elongation Factor Spt6 Binds the Phosphorylated RNA Polymerase II C-terminal Repeat Domain (CTD)

1 reference

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6 September 2017

Uniform transitions of the general RNA polymerase II transcription complex

1 reference

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Novel trans-tail regulation of H2B ubiquitylation and H3K4 methylation by the N terminus of histone H2A.

1 reference

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The human PAF1 complex acts in chromatin transcription elongation both independently and cooperatively with SII/TFIIS

1 reference

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6 September 2017

The Paf1 complex: platform or player in RNA polymerase II transcription?

1 reference

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6 September 2017

Histones: annotating chromatin

1 reference

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6 September 2017

What controls nucleosome positions?

1 reference

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6 September 2017

Phosphorylation of the transcription elongation factor Spt5 by yeast Bur1 kinase stimulates recruitment of the PAF complex.

1 reference

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Dimethylation of H3K4 by Set1 recruits the Set3 histone deacetylase complex to 5' transcribed regions

1 reference

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6 September 2017

Control of transcriptional elongation and cotranscriptional histone modification by the yeast BUR kinase substrate Spt5.

1 reference

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6 September 2017

The biology of chromatin remodeling complexes

1 reference

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A genome-scale RNAi screen for Oct4 modulators defines a role of the Paf1 complex for embryonic stem cell identity

1 reference

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Phosphorylation of the Pol II CTD by KIN28 enhances BUR1/BUR2 recruitment and Ser2 CTD phosphorylation near promoters

1 reference

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6 September 2017

Bidirectional promoters generate pervasive transcription in yeast

1 reference

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6 September 2017

Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome

1 reference

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The parafibromin tumor suppressor protein inhibits cell proliferation by repression of the c-myc proto-oncogene

1 reference

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Roles for Ctk1 and Spt6 in regulating the different methylation states of histone H3 lysine 36.

1 reference

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6 September 2017

Direct interactions between the Paf1 complex and a cleavage and polyadenylation factor are revealed by dissociation of Paf1 from RNA polymerase II.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

6 September 2017

Parafibromin, a component of the human PAF complex, regulates growth factors and is required for embryonic development and survival in adult mice

1 reference

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6 September 2017

The Paf1 complex promotes displacement of histones upon rapid induction of transcription by RNA polymerase II

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

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Histone chaperones: 30 years from isolation to elucidation of the mechanisms of nucleosome assembly and disassembly

1 reference

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6 September 2017

Regulation of histone modification and cryptic transcription by the Bur1 and Paf1 complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

6 September 2017

Paf1 complex homologues are required for Notch-regulated transcription during somite segmentation

1 reference

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Human RNA polymerase II-associated factor complex: dysregulation in cancer.

1 reference

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6 September 2017

Rtf1 is a multifunctional component of the Paf1 complex that regulates gene expression by directing cotranscriptional histone modification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

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H2A.Z-mediated localization of genes at the nuclear periphery confers epigenetic memory of previous transcriptional state

1 reference

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The role of chromatin during transcription

1 reference

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Cytoplasmic decay of intergenic transcripts in Saccharomyces cerevisiae

1 reference

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6 September 2017

Drosophila Rtf1 functions in histone methylation, gene expression, and Notch signaling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

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Bur1/Bur2 and the Ctk complex in yeast: the split personality of mammalian P-TEFb

1 reference

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6 September 2017

Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

6 September 2017

The Spt4p subunit of yeast DSIF stimulates association of the Paf1 complex with elongating RNA polymerase II.

1 reference

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6 September 2017

The BUR1 cyclin-dependent protein kinase is required for the normal pattern of histone methylation by SET2.

1 reference

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6 September 2017

A high-resolution map of transcription in the yeast genome

1 reference

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Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae

1 reference

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6 September 2017

Evidence that Spt2/Sin1, an HMG-like factor, plays roles in transcription elongation, chromatin structure, and genome stability in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

6 September 2017

Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

6 September 2017

Drosophila Paf1 modulates chromatin structure at actively transcribed genes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

6 September 2017

The Bur1/Bur2 complex is required for histone H2B monoubiquitination by Rad6/Bre1 and histone methylation by COMPASS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

6 September 2017

Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex

1 reference

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6 September 2017

Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription

1 reference

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6 September 2017

A Requirement for the Saccharomyces cerevisiae Paf1 complex in snoRNA 3' end formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

6 September 2017

BUR kinase selectively regulates H3 K4 trimethylation and H2B ubiquitylation through recruitment of the PAF elongation complex

1 reference

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6 September 2017

Histone H2B ubiquitylation controls processive methylation but not monomethylation by Dot1 and Set1.

1 reference

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The Snf1 protein kinase and Sit4 protein phosphatase have opposing functions in regulating TATA-binding protein association with the Saccharomyces cerevisiae INO1 promoter

1 reference

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Histone H2B ubiquitylation is associated with elongating RNA polymerase II

1 reference

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6 September 2017

Interaction between transcription elongation factors and mRNA 3'-end formation at the Saccharomyces cerevisiae GAL10-GAL7 locus.

1 reference

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6 September 2017

Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

6 September 2017

The Paf1 complex has functions independent of actively transcribing RNA polymerase II.

1 reference

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6 September 2017

Rad6 plays a role in transcriptional activation through ubiquitylation of histone H2B.

1 reference

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6 September 2017

Transitions in RNA polymerase II elongation complexes at the 3' ends of genes

1 reference

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6 September 2017

Molecular evidence indicating that the yeast PAF complex is required for transcription elongation

1 reference

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6 September 2017

The FACT complex travels with elongating RNA polymerase II and is important for the fidelity of transcriptional initiation in vivo

1 reference

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6 September 2017

Transcriptional activation via sequential histone H2B ubiquitylation and deubiquitylation, mediated by SAGA-associated Ubp8.

1 reference

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6 September 2017

Transcription elongation factors repress transcription initiation from cryptic sites.

1 reference

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6 September 2017

FACT facilitates transcription-dependent nucleosome alteration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

6 September 2017

The Paf1 complex is essential for histone monoubiquitination by the Rad6-Bre1 complex, which signals for histone methylation by COMPASS and Dot1p

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

6 September 2017

The Rtf1 component of the Paf1 transcriptional elongation complex is required for ubiquitination of histone H2B.

1 reference

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6 September 2017

Chromatin remodeling protein Chd1 interacts with transcription elongation factors and localizes to transcribed genes

1 reference

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6 September 2017

The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: linking transcriptional elongation to histone methylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

6 September 2017

Molecular evidence for a positive role of Spt4 in transcription elongation

1 reference

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6 September 2017

RNA polymerase II elongation factors of Saccharomyces cerevisiae: a targeted proteomics approach

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6 September 2017

Evidence that Swi/Snf directly represses transcription in S. cerevisiae

1 reference

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6 September 2017

Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeast

1 reference

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6 September 2017

Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo

1 reference

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6 September 2017

The Paf1 complex physically and functionally associates with transcription elongation factors in vivo

1 reference

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6 September 2017

Ctr9, Rtf1, and Leo1 are components of the Paf1/RNA polymerase II complex

1 reference

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6 September 2017

Spt16-Pob3 and the HMG protein Nhp6 combine to form the nucleosome-binding factor SPN.

1 reference

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6 September 2017

Phosphorylation of the RNA polymerase II carboxy-terminal domain by the Bur1 cyclin-dependent kinase

1 reference

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6 September 2017

A new mathematical model for relative quantification in real-time RT-PCR

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6 September 2017

Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription

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6 September 2017

BUR1 and BUR2 encode a divergent cyclin-dependent kinase-cyclin complex important for transcription in vivo

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6 September 2017

Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications

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6 September 2017

Evidence that Spt4, Spt5, and Spt6 control transcription elongation by RNA polymerase II in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

6 September 2017

DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs

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6 September 2017

The unfolded protein response coordinates the production of endoplasmic reticulum protein and endoplasmic reticulum membrane

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6 September 2017

Identification of RTF1, a novel gene important for TATA site selection by TATA box-binding protein in Saccharomyces cerevisiae

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6 September 2017

Cdc73p and Paf1p are found in a novel RNA polymerase II-containing complex distinct from the Srbp-containing holoenzyme

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6 September 2017

Faithful chromosome transmission requires Spt4p, a putative regulator of chromatin structure in Saccharomyces cerevisiae

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6 September 2017

Evidence that Spt6p controls chromatin structure by a direct interaction with histones

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6 September 2017

Construction of a set of convenient Saccharomyces cerevisiae strains that are isogenic to S288C

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6 September 2017

Mutations affecting Ty-mediated expression of the HIS4 gene of Saccharomyces cerevisiae

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6 September 2017

SPT4, SPT5 and SPT6 interactions: effects on transcription and viability in Saccharomyces cerevisiae

1 reference

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6 September 2017

Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae.

1 reference

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14 September 2017

The human homologue of the RNA polymerase II-associated factor 1 (hPaf1), localized on the 19q13 amplicon, is associated with tumorigenesis.

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14 September 2017

Organization of theGAL1–GAL10intergeaic control region chromatin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

14 September 2017

H3 lysine 4 di- and tri-methylation deposited by cryptic transcription attenuates promoter activation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

25 September 2017

The Paf1 complex represses ARG1 transcription in Saccharomyces cerevisiae by promoting histone modifications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

23 June 2018

A novel assay identifies transcript elongation roles for the Nup84 complex and RNA processing factors.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

23 June 2018

Transcription regulation by the noncoding RNA SRG1 requires Spt2-dependent chromatin deposition in the wake of RNA polymerase II.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

23 June 2018

A RSC/nucleosome complex determines chromatin architecture and facilitates activator binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

23 June 2018

DSIF, the Paf1 complex, and Tat-SF1 have nonredundant, cooperative roles in RNA polymerase II elongation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

23 June 2018

Regulation of histone H3K4 tri-methylation and PAF complex recruitment by the Ccr4-Not complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

23 June 2018

Histone chaperone spt16 promotes redeposition of the original h3-h4 histones evicted by elongating RNA polymerase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

31 August 2018

A posttranscriptional role for the yeast Paf1-RNA polymerase II complex is revealed by identification of primary targets.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

31 August 2018

Ubiquitination of histone H2B by Rad6 is required for efficient Dot1-mediated methylation of histone H3 lysine 79.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187070

31 August 2018

Identifiers

10.1128/EC.05141-11

1 reference

Europe PubMed Central

PMC publication ID

4 September 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

4 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

4 September 2017

ResearchGate publication ID

0 references

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