(Q38635379)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28786193%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

title

Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow (English)

1 reference

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27 March 2020

1 reference

1 reference

1

1 reference

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27 March 2020

Rui Faria

2

1 reference

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27 March 2020

Roger Butlin

3

1 reference

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27 March 2020

Marina Rafajlović

6

1 reference

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27 March 2020

Mohamed Noor

7

1 reference

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27 March 2020

author name string

J Galindo

4

1 reference

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27 March 2020

N Bierne

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28786193%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

B Mehlig

8

1 reference

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27 March 2020

A M Westram

9

1 reference

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27 March 2020

publication date

1 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28786193%20AND%20SRC:MED&resulttype=core&format=json

Journal of Evolutionary Biology

27 March 2020

number of pages

28

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

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27 March 2020

volume

30

1 reference

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27 March 2020

issue

8

1 reference

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27 March 2020

page(s)

1450-1477

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28786193%20AND%20SRC:MED&resulttype=core&format=json

Hybridization and speciation

27 March 2020

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Evolutionary biology: how did the human species form?

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The barrier to genetic exchange between hybridising populations

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Analysis of Hybrid Zones

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Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster

21 January 2018

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Genetic architecture of skeletal evolution in European lake and stream stickleback

21 January 2018

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ABC as a flexible framework to estimate demography over space and time: some cons, many pros

21 January 2018

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THE DISTINCTIVE FOOTPRINTS OF LOCAL HITCHHIKING IN A VARIED ENVIRONMENT AND GLOBAL HITCHHIKING IN A SUBDIVIDED POPULATION

21 January 2018

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The coupling hypothesis: why genome scans may fail to map local adaptation genes.

21 January 2018

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A potential benefit of albinism in Astyanax cavefish: downregulation of the oca2 gene increases tyrosine and catecholamine levels as an alternative to melanin synthesis

21 January 2018

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Connecting genotypes, phenotypes and fitness: harnessing the power of CRISPR/Cas9 genome editing

21 January 2018

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The genomic substrate for adaptive radiation in African cichlid fish

21 January 2018

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No effect of recombination on the efficacy of natural selection in primates

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Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers

21 January 2018

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Speciation by reinforcement

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Recombination and speciation

21 January 2018

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Review. Sympatric, parapatric or allopatric: the most important way to classify speciation?

21 January 2018

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Parallel evolution of local adaptation and reproductive isolation in the face of gene flow

21 January 2018

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The genomic architecture of population divergence between subspecies of the European rabbit

21 January 2018

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Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer

21 January 2018

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Fundamental concepts in genetics: Effective population size and patterns of molecular evolution and variation

21 January 2018

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The role of background selection in shaping patterns of molecular evolution and variation: evidence from variability on the Drosophila X chromosome

21 January 2018

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The relations between recombination rate and patterns of molecular variation and evolution in Drosophila

21 January 2018

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Adaptive evolution and segregating load contribute to the genomic landscape of divergence in two tree species connected by episodic gene flow.

21 January 2018

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Multiway admixture deconvolution using phased or unphased ancestral panels

21 January 2018

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Widespread parallel evolution in sticklebacks by repeated fixation of Ectodysplasin alleles

21 January 2018

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Background selection as baseline for nucleotide variation across the Drosophila genome

21 January 2018

1 reference

The Hill-Robertson effect: evolutionary consequences of weak selection and linkage in finite populations

21 January 2018

1 reference

Multiplex genome engineering using CRISPR/Cas systems

21 January 2018

1 reference

Genetic incompatibilities are widespread within species

21 January 2018

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Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

21 January 2018

1 reference

Approximate Bayesian Computation (ABC) in practice.

21 January 2018

1 reference

Genomic signatures of selection at linked sites: unifying the disparity among species

21 January 2018

1 reference

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

21 January 2018

1 reference

Special features of RAD Sequencing data: implications for genotyping

21 January 2018

1 reference

Genomic analysis of a migratory divide reveals candidate genes for migration and implicates selective sweeps in generating islands of differentiation

21 January 2018

1 reference

Relaxed phylogenetics and dating with confidence

21 January 2018

1 reference

Testing for ancient admixture between closely related populations

21 January 2018

1 reference

The impact of recombination on nucleotide substitutions in the human genome

21 January 2018

1 reference

Ancestral population genomics

21 January 2018

1 reference

Historical introgression among the American live oaks and the comparative nature of tests for introgression

21 January 2018

1 reference

Experimental evidence of genome-wide impact of ecological selection during early stages of speciation-with-gene-flow

21 January 2018

1 reference

A Genomic Map of the Effects of Linked Selection in Drosophila

21 January 2018

1 reference

Genome-wide signals of positive selection in human evolution

21 January 2018

1 reference

Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology

21 January 2018

1 reference

The consequences of not accounting for background selection in demographic inference

21 January 2018

1 reference

Robust demographic inference from genomic and SNP data

21 January 2018

1 reference

The distribution of fitness effects of new mutations

21 January 2018

1 reference

Chromosomal speciation revisited: rearranging theory with pieces of evidence

21 January 2018

1 reference

The efficacy of divergence hitchhiking in generating genomic islands during ecological speciation.

21 January 2018

1 reference

Allopatric genetic origins for sympatric host-plant shifts and race formation in Rhagoletis

21 January 2018

1 reference

Adaptive chromosomal divergence driven by mixed geographic mode of evolution

21 January 2018

1 reference

The genomics of speciation-with-gene-flow

21 January 2018

1 reference

Establishment of new mutations under divergence and genome hitchhiking.

21 January 2018

1 reference

The impact of selection, gene flow and demographic history on heterogeneous genomic divergence: three-spine sticklebacks in divergent environments.

21 January 2018

1 reference

Genomics of divergence along a continuum of parapatric population differentiation

21 January 2018

1 reference

Theoretical models of the influence of genomic architecture on the dynamics of speciation.

21 January 2018

1 reference

Natural selection in gene-dense regions shapes the genomic pattern of polymorphism in wild and domesticated rice.

21 January 2018

1 reference

A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective

21 January 2018

1 reference

Local interspecies introgression is the main cause of extreme levels of intraspecific differentiation in mussels

21 January 2018

1 reference

Genome-wide patterns and properties of de novo mutations in humans

21 January 2018

1 reference

The genetic architecture of reproductive isolation during speciation-with-gene-flow in lake whitefish species pairs assessed by RAD sequencing

21 January 2018

1 reference

Genome sequencing reveals complex speciation in the Drosophila simulans clade

21 January 2018

1 reference

The effect of RAD allele dropout on the estimation of genetic variation within and between populations.

21 January 2018

1 reference

A new method to scan genomes for introgression in a secondary contact model.

21 January 2018

1 reference

Genome Assembly Improvement and Mapping Convergently Evolved Skeletal Traits in Sticklebacks with Genotyping-by-Sequencing

21 January 2018

1 reference

Bayesian estimation of genomic clines

21 January 2018

1 reference

Experimental evidence for ecological selection on genome variation in the wild

21 January 2018

1 reference

Highly variable recombinational landscape modulates efficacy of natural selection in birds

21 January 2018

1 reference

A Draft Sequence of the Neandertal Genome

21 January 2018

1 reference

Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data

21 January 2018

1 reference

Reduced efficacy of selection in regions of the Drosophila genome that lack crossing over

21 January 2018

1 reference

Genomic islands of differentiation between house mouse subspecies

21 January 2018

1 reference

Inferring demographic history from a spectrum of shared haplotype lengths

21 January 2018

1 reference

The language of speciation.

21 January 2018

1 reference

Heterogeneous genome divergence, differential introgression, and the origin and structure of hybrid zones

21 January 2018

1 reference

The genome of the Western clawed frog Xenopus tropicalis

21 January 2018

1 reference

Soft sweeps: molecular population genetics of adaptation from standing genetic variation

21 January 2018

1 reference

The changing face of the molecular evolutionary clock

21 January 2018

1 reference

Time dependency of molecular rate estimates and systematic overestimation of recent divergence times

21 January 2018

1 reference

Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions

21 January 2018

1 reference

On computing the coalescence time density in an isolation-with-migration model with few samples.

21 January 2018

1 reference

Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection

21 January 2018

1 reference

Variation in the mutation rate across mammalian genomes

21 January 2018

1 reference

A single amino acid mutation contributes to adaptive beach mouse color pattern

21 January 2018

1 reference

Design and analysis of admixture mapping studies

21 January 2018

1 reference

Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags

21 January 2018

1 reference

Detecting recent selective sweeps while controlling for mutation rate and background selection

21 January 2018

1 reference

The evolutionary dynamics of eukaryotic gene order

21 January 2018

1 reference

Recurrent selection explains parallel evolution of genomic regions of high relative but low absolute differentiation in a ring species

21 January 2018

1 reference

Comparative recombination rates in the rat, mouse, and human genomes

21 January 2018

1 reference

The genomic basis of adaptive evolution in threespine sticklebacks

21 January 2018

1 reference

A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution

21 January 2018

1 reference

Population genomic signatures of divergent adaptation, gene flow and hybrid speciation in the rapid radiation of Lake Victoria cichlid fishes

21 January 2018

1 reference

Chromosome inversions, local adaptation and speciation

21 January 2018

1 reference

A role for a neo-sex chromosome in stickleback speciation

21 January 2018

1 reference

Statistical phylogeography

21 January 2018

1 reference

Measurements of spontaneous rates of mutations in the recent past and the near future

21 January 2018

1 reference

A high-resolution recombination map of the human genome

21 January 2018

1 reference

Evolution of Darwin's finches and their beaks revealed by genome sequencing

21 January 2018

1 reference

A beak size locus in Darwin's finches facilitated character displacement during a drought

21 January 2018

1 reference

Parallel genetic divergence among coastal-marine ecotype pairs of European anchovy explained by differential introgression after secondary contact.

21 January 2018

1 reference

Comparative species divergence across eight triplets of spiny lizards (Sceloporus) using genomic sequence data

21 January 2018

1 reference

Evolution of stickleback in 50 years on earthquake-uplifted islands.

21 January 2018

1 reference

Inference of human population history from individual whole-genome sequences

21 January 2018

1 reference

The lengths of admixture tracts

21 January 2018

1 reference

Natural selection affects multiple aspects of genetic variation at putatively neutral sites across the human genome.

21 January 2018

1 reference

Evaluation of demographic history and neutral parameterization on the performance of FST outlier tests

21 January 2018

1 reference

Genetic architecture in a marine hybrid zone: comparing outlier detection and genomic clines analysis in the bivalve Macoma balthica.

21 January 2018

1 reference

A new isolation with migration model along complete genomes infers very different divergence processes among closely related great ape species

21 January 2018

1 reference

How reticulated are species?

21 January 2018

1 reference

Genomics of Rapid Incipient Speciation in Sympatric Threespine Stickleback

21 January 2018

1 reference

Genome-wide evidence for speciation with gene flow in Heliconius butterflies

21 January 2018

1 reference

Evaluating the use of ABBA-BABA statistics to locate introgressed loci

21 January 2018

1 reference

Complex histories of repeated gene flow in Cameroon crater lake cichlids cast doubt on one of the clearest examples of sympatric speciation.

21 January 2018

1 reference

Diabolical survival in Death Valley: recent pupfish colonization, gene flow and genetic assimilation in the smallest species range on earth

21 January 2018

1 reference

Initiation of meiotic recombination: how and where? Conservation and specificities among eukaryotes

21 January 2018

1 reference

Genomic impacts of chromosomal inversions in parapatric Drosophila species

21 January 2018

1 reference

Evaluating genomic divergence and parallelism in replicate ecomorphs from young and old cichlid adaptive radiations

21 January 2018

1 reference

Evidence for ecology's role in speciation

21 January 2018

1 reference

Population genomics of rapid adaptation by soft selective sweeps.

21 January 2018

1 reference

Widespread genomic divergence during sympatric speciation

21 January 2018

1 reference

Drive against hotspot motifs in primates implicates the PRDM9 gene in meiotic recombination

21 January 2018

1 reference

Recombination rate variation and speciation: theoretical predictions and empirical results from rabbits and mice

21 January 2018

1 reference

Demographic divergence history of pied flycatcher and collared flycatcher inferred from whole-genome re-sequencing data

21 January 2018

1 reference

Genomic islands of divergence in hybridizing Heliconius butterflies identified by large-scale targeted sequencing

21 January 2018

1 reference

Genome-wide patterns of divergence and gene flow across a butterfly radiation

21 January 2018

1 reference

SNP genotyping defines complex gene-flow boundaries among African malaria vector mosquitoes.

21 January 2018

1 reference

Extensive de novo mutation rate variation between individuals and across the genome of Chlamydomonas reinhardtii

21 January 2018

1 reference

A genetic mechanism for female-limited Batesian mimicry in Papilio butterfly

21 January 2018

1 reference

Scanning Human Gene Deserts for Long-Range Enhancers

21 January 2018

1 reference

Chromosomal inversions and the reproductive isolation of species

21 January 2018

1 reference

Mutagenesis from meiotic recombination is not a primary driver of sequence divergence between Saccharomyces species

21 January 2018

1 reference

Islands of speciation or mirages in the desert? Examining the role of restricted recombination in maintaining species.

21 January 2018

1 reference

The pattern of polymorphism in Arabidopsis thaliana

21 January 2018

1 reference

Speciation with gene flow could be common

21 January 2018

1 reference

Genomic divergence during speciation: causes and consequences

21 January 2018

1 reference

Widespread yet heterogeneous genomic divergence

21 January 2018

1 reference

Host-plant adaptation drives the parallel evolution of reproductive isolation.

21 January 2018

1 reference

Ecological explanations for (incomplete) speciation

21 January 2018

1 reference

Divergent selection and heterogeneous genomic divergence

21 January 2018

1 reference

Genomic consequences of multiple speciation processes in a stick insect.

21 January 2018

1 reference

The Nearly Neutral Theory of Molecular Evolution

21 January 2018

1 reference

THE POPULATION GENETICS OF ADAPTATION: THE DISTRIBUTION OF FACTORS FIXED DURING ADAPTIVE EVOLUTION.

21 January 2018

1 reference

Recombination Rate Evolution and the Origin of Species

21 January 2018

1 reference

More accurate phylogenies inferred from low-recombination regions in the presence of incomplete lineage sorting

21 January 2018

1 reference

Soft sweeps II--molecular population genetics of adaptation from recurrent mutation or migration

21 January 2018

1 reference

A single gene causes both male sterility and segregation distortion in Drosophila hybrids

21 January 2018

1 reference

An essential cell cycle regulation gene causes hybrid inviability in Drosophila

21 January 2018

1 reference

Determining the Effect of Natural Selection on Linked Neutral Divergence across Species

21 January 2018

1 reference

The genomic landscape underlying phenotypic integrity in the face of gene flow in crows

21 January 2018

1 reference

Inference of historical changes in migration rate from the lengths of migrant tracts

21 January 2018

1 reference

Speciation genetics: epistasis, conflict and the origin of species

21 January 2018

1 reference

Sensitive detection of chromosomal segments of distinct ancestry in admixed populations

21 January 2018

1 reference

A universal mechanism generating clusters of differentiated loci during divergence-with-migration

21 January 2018

1 reference

Shared and nonshared genomic divergence in parallel ecotypes of Littorina saxatilis at a local scale

21 January 2018

1 reference

SNP signatures of selection on standing genetic variation and their association with adaptive phenotypes along gradients of ecological speciation in lake whitefish species pairs (Coregonus spp.).

21 January 2018

1 reference

Genome-wide patterns of divergence during speciation: the lake whitefish case study

21 January 2018

1 reference

Genomic islands of divergence are not affected by geography of speciation in sunflowers

21 January 2018

1 reference

Shared selective pressure and local genomic landscape lead to repeatable patterns of genomic divergence in sunflowers

21 January 2018

1 reference

LABORATORY EXPERIMENTS ON SPECIATION: WHAT HAVE WE LEARNED IN 40 YEARS?

21 January 2018

1 reference

ABC inference of multi-population divergence with admixture from unphased population genomic data

21 January 2018

1 reference

The QTN program and the alleles that matter for evolution: all that's gold does not glitter

21 January 2018

1 reference

Genomic evidence for the parallel evolution of coastal forms in the Senecio lautus complex

21 January 2018

1 reference

Genome divergence during evolutionary diversification as revealed in replicate lake-stream stickleback population pairs.

21 January 2018

1 reference

Recombination in the threespine stickleback genome--patterns and consequences

21 January 2018

1 reference

The genomic signature of parallel adaptation from shared genetic variation

21 January 2018

1 reference

The genomics of ecological vicariance in threespine stickleback fish

21 January 2018

1 reference

Powerful methods for detecting introgressed regions from population genomic data

21 January 2018

1 reference

Inferring the demographic history underlying parallel genomic divergence among pairs of parasitic and nonparasitic lamprey ecotypes

21 January 2018

1 reference

Crossing the species barrier: genomic hotspots of introgression between two highly divergent Ciona intestinalis species.

21 January 2018

1 reference

Can we continue to neglect genomic variation in introgression rates when inferring the history of speciation? A case study in a Mytilus hybrid zone.

21 January 2018

1 reference

Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence

21 January 2018

1 reference

Detecting recent positive selection in the human genome from haplotype structure

21 January 2018

1 reference

The Hmr and Lhr hybrid incompatibility genes suppress a broad range of heterochromatic repeats

21 January 2018

1 reference

Revising the human mutation rate: implications for understanding human evolution

21 January 2018

1 reference

Insights into hominid evolution from the gorilla genome sequence

21 January 2018

1 reference

Inferring human population size and separation history from multiple genome sequences

21 January 2018

1 reference

Sequencing pools of individuals — mining genome-wide polymorphism data without big funding

21 January 2018

1 reference

Genomics and the origin of species

21 January 2018

1 reference

Reinforcement and the genetics of nonrandom mating.

21 January 2018

1 reference

The Role of Reinforcement in Speciation: Theory and Data

21 January 2018

1 reference

Magic traits in speciation: 'magic' but not rare?

21 January 2018

1 reference

Demographic inferences using short-read genomic data in an approximate Bayesian computation framework: in silico evaluation of power, biases and proof of concept in Atlantic walrus.

21 January 2018

1 reference

Genetic and developmental basis of evolutionary pelvic reduction in threespine sticklebacks

21 January 2018

1 reference

Patterns of male sterility in a grasshopper hybrid zone imply accumulation of hybrid incompatibilities without selection.

21 January 2018

1 reference

Gene flow and the geographic structure of natural populations

21 January 2018

1 reference

A framework for comparing processes of speciation in the presence of gene flow

21 January 2018

1 reference

Recombination rate variation in closely related species.

21 January 2018

1 reference

Stick insect genomes reveal natural selection's role in parallel speciation

21 January 2018

1 reference

Understanding the origin of species with genome-scale data: modelling gene flow

21 January 2018

1 reference

Genetic hitchhiking versus background selection: the controversy and its implications

21 January 2018

1 reference

Signatures of positive selection: from selective sweeps at individual loci to subtle allele frequency changes in polygenic adaptation

21 January 2018

1 reference

Using genome scans of DNA polymorphism to infer adaptive population divergence

21 January 2018

1 reference

Integrating evolutionary and functional approaches to infer adaptation at specific loci

21 January 2018

1 reference

Divergent selection on opsins drives incipient speciation in Lake Victoria cichlids

21 January 2018

1 reference

A pair of centromeric proteins mediates reproductive isolation in Drosophila species

21 January 2018

1 reference

European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation

21 January 2018

1 reference

The genomics of adaptation, divergence and speciation: a congealing theory.

21 January 2018

1 reference

Evidence for mito-nuclear and sex-linked reproductive barriers between the hybrid Italian sparrow and its parent species

21 January 2018

1 reference

Genomic islands of speciation or genomic islands and speciation?

21 January 2018

1 reference

Genomic islands of speciation in Anopheles gambiae

21 January 2018

1 reference

Adaptive divergence in the monkey flower Mimulus guttatus is maintained by a chromosomal inversion

21 January 2018

1 reference

Detection of selective sweeps in structured populations: a comparison of recent methods

21 January 2018

1 reference

Divergence hitchhiking and the spread of genomic isolation during ecological speciation-with-gene-flow

21 January 2018

1 reference

The genetic mosaic suggests a new role for hitchhiking in ecological speciation.

21 January 2018

1 reference

Evolution of heterogeneous genome differentiation across multiple contact zones in a crow species complex

21 January 2018

1 reference

The maintenance of reproductive isolation in a mosaic hybrid zone between the fire-bellied toads Bombina bombina and B. variegata

21 January 2018

1 reference

A map of recent positive selection in the human genome

21 January 2018

1 reference

PacBio-LITS: a large-insert targeted sequencing method for characterization of human disease-associated chromosomal structural variations

21 January 2018

1 reference

Indirect measures of gene flow and migration: FST not equal to 1/(4Nm + 1).

21 January 2018

1 reference

Making sense of genomic islands of differentiation in light of speciation

21 January 2018

1 reference

Linked selected and neutral loci in heterogeneous environments.

21 January 2018

1 reference

The genic view of the process of speciation

21 January 2018

1 reference

21 January 2018

1 reference

Hawthorn-infesting populations of Rhagoletis pomonella in Mexico and speciation mode plurality

21 January 2018

1 reference

Genomic rearrangements and the evolution of clusters of locally adaptive loci.

21 January 2018

1 reference

Local Adaptation by Alleles of Small Effect.

21 January 2018

1 reference

The evolution of genomic islands by increased establishment probability of linked alleles.

21 January 2018

1 reference

The Effects of Background and Interference Selection on Patterns of Genetic Variation in Subdivided Populations

21 January 2018

1 reference

THE GENETIC ARCHITECTURE OF ADAPTATION UNDER MIGRATION-SELECTION BALANCE

21 January 2018

1 reference

Speciation in nature: the threespine stickleback model systems

21 January 2018

1 reference

PHENOTYPE-DEPENDENT NATIVE HABITAT PREFERENCE FACILITATES DIVERGENCE BETWEEN PARAPATRIC LAKE AND STREAM STICKLEBACK

21 January 2018

1 reference

27 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1111/J.1558-5646.2009.00699.X

Identifiers

DOI

10.1111/JEB.13047

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28786193%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

1 reference