(Q38673272)

5 September 2017

title

Beyond starvation: An update on the autophagic machinery and its functions (English)

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5 September 2017

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2

Tamotsu Yoshimori

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5 September 2017

Tsuyoshi Kawabata

1

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5 September 2017

publication date

9 December 2015

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Journal of Molecular and Cellular Cardiology

5 September 2017

published in

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5 September 2017

volume

95

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5 September 2017

page(s)

2-10

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The role of Atg proteins in autophagosome formation

5 September 2017

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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Chemical modulators of autophagy as biological probes and potential therapeutics

7 January 2021

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PI(5)P regulates autophagosome biogenesis

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Novel targets for Huntington's disease in an mTOR-independent autophagy pathway

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Regulation of mTORC1 and its impact on gene expression at a glance

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

TFEB links autophagy to lysosomal biogenesis

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Hierarchy of Atg proteins in pre-autophagosomal structure organization

7 January 2021

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Characterization of autophagosome formation site by a hierarchical analysis of mammalian Atg proteins

7 January 2021

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Kinase-inactivated ULK proteins inhibit autophagy via their conserved C-terminal domains using an Atg13-independent mechanism

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

siRNA screening of the kinome identifies ULK1 as a multidomain modulator of autophagy

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

FIP200, a ULK-interacting protein, is required for autophagosome formation in mammalian cells

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Dynamic association of the ULK1 complex with omegasomes during autophagy induction.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Identification of Barkor as a mammalian autophagy-specific factor for Beclin 1 and class III phosphatidylinositol 3-kinase

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Induction of autophagy and inhibition of tumorigenesis by beclin 1

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Beclin-phosphatidylinositol 3-kinase complex functions at the trans-Golgi network

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Bif-1 interacts with Beclin 1 through UVRAG and regulates autophagy and tumorigenesis

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Bif-1/endophilin B1: a candidate for crescent driving force in autophagy

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Mammalian Atg18 (WIPI2) localizes to omegasome-anchored phagophores and positively regulates LC3 lipidation

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Autophagosome formation from membrane compartments enriched in phosphatidylinositol 3-phosphate and dynamically connected to the endoplasmic reticulum

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

WIPI2 links LC3 conjugation with PI3P, autophagosome formation, and pathogen clearance by recruiting Atg12-5-16L1.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

FIP200 regulates targeting of Atg16L1 to the isolation membrane

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

A ubiquitin-like system mediates protein lipidation

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

A protein conjugation system essential for autophagy

7 January 2021

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Guidelines for the use and interpretation of assays for monitoring autophagy

7 January 2021

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Autophagy in mammalian development and differentiation

7 January 2021

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An Atg4B mutant hampers the lipidation of LC3 paralogues and causes defects in autophagosome closure

7 January 2021

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Atg4B(C74A) hampers autophagosome closure: a useful protein for inhibiting autophagy

7 January 2021

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Atg8, a ubiquitin-like protein required for autophagosome formation, mediates membrane tethering and hemifusion

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Atg8 controls phagophore expansion during autophagosome formation

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

FYCO1 is a Rab7 effector that binds to LC3 and PI3P to mediate microtubule plus end-directed vesicle transport

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Dynein-dependent movement of autophagosomes mediates efficient encounters with lysosomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

LC3 and GATE-16/GABARAP subfamilies are both essential yet act differently in autophagosome biogenesis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Ultrastructural analysis of autophagosome organization using mammalian autophagy-deficient cells.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

The origin of the autophagosomal membrane

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

A subdomain of the endoplasmic reticulum forms a cradle for autophagosome formation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Electron tomography reveals the endoplasmic reticulum as a membrane source for autophagosome formation

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Autophagosomes form at ER-mitochondria contact sites

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Regulation of dsDNA-induced innate immune responses by membrane trafficking.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

The role of autophagy during the early neonatal starvation period

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Impairment of starvation-induced and constitutive autophagy in Atg7-deficient mice

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Loss of the autophagy protein Atg16L1 enhances endotoxin-induced IL-1beta production

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Atg9 vesicles are an important membrane source during early steps of autophagosome formation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

An Atg9-containing compartment that functions in the early steps of autophagosome biogenesis

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Starvation and ULK1-dependent cycling of mammalian Atg9 between the TGN and endosomes

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Dynamic and transient interactions of Atg9 with autophagosomes, but not membrane integration, are required for autophagy.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

CapZ regulates autophagosomal membrane shaping by promoting actin assembly inside the isolation membrane

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

The ER-Golgi intermediate compartment is a key membrane source for the LC3 lipidation step of autophagosome biogenesis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Phosphatidylinositol 3-kinase and COPII generate LC3 lipidation vesicles from the ER-Golgi intermediate compartment

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Structural basis of the autophagy-related LC3/Atg13 LIR complex: recognition and interaction mechanism

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

iLIR: A web resource for prediction of Atg8-family interacting proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Mutations in FYCO1 cause autosomal-recessive congenital cataracts.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Deletion of autophagy-related 5 (Atg5) and Pik3c3 genes in the lens causes cataract independent of programmed organelle degradation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

The hairpin-type tail-anchored SNARE syntaxin 17 targets to autophagosomes for fusion with endosomes/lysosomes

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Syntaxin 17: the autophagosomal SNARE.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

The HOPS complex mediates autophagosome-lysosome fusion through interaction with syntaxin 17

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

LC3 is a novel substrate for the mammalian Hippo kinases, STK3/STK4.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Phosphorylation of LC3 by the Hippo kinases STK3/STK4 is essential for autophagy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

PLEKHM1 regulates autophagosome-lysosome fusion through HOPS complex and LC3/GABARAP proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Rubicon and PLEKHM1 negatively regulate the endocytic/autophagic pathway via a novel Rab7-binding domain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

The GTPase Ypt7p of Saccharomyces cerevisiae is required on both partner vacuoles for the homotypic fusion step of vacuole inheritance.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Dissection of the autophagosome maturation process by a novel reporter protein, tandem fluorescent-tagged LC3

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

An initial step of GAS-containing autophagosome-like vacuoles formation requires Rab7

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Binding Rubicon to cross the Rubicon.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Two Beclin 1-binding proteins, Atg14L and Rubicon, reciprocally regulate autophagy at different stages

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Distinct regulation of autophagic activity by Atg14L and Rubicon associated with Beclin 1-phosphatidylinositol-3-kinase complex

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

The RUN domain of rubicon is important for hVps34 binding, lipid kinase inhibition, and autophagy suppression

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

mTORC1 phosphorylates UVRAG to negatively regulate autophagosome and endosome maturation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Acetylation of Beclin 1 inhibits autophagosome maturation and promotes tumour growth

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

A kinase-independent role for EGF receptor in autophagy initiation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

HCV induces the expression of Rubicon and UVRAG to temporally regulate the maturation of autophagosomes and viral replication

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

mTOR is essential for growth and proliferation in early mouse embryos and embryonic stem cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Rubicon controls endosome maturation as a Rab7 effector

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Molecular characterization of LC3-associated phagocytosis reveals distinct roles for Rubicon, NOX2 and autophagy proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Ultrastructural analysis of the autophagic process in yeast: detection of autophagosomes and their characterization

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Receptor-mediated mitophagy in yeast and mammalian systems

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Mitochondria-anchored receptor Atg32 mediates degradation of mitochondria via selective autophagy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Atg32 is a mitochondrial protein that confers selectivity during mitophagy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Mitochondrial outer-membrane protein FUNDC1 mediates hypoxia-induced mitophagy in mammalian cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Nix is a selective autophagy receptor for mitochondrial clearance

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Microtubule-associated protein 1 light chain 3 (LC3) interacts with Bnip3 protein to selectively remove endoplasmic reticulum and mitochondria via autophagy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

A regulatory signaling loop comprising the PGAM5 phosphatase and CK2 controls receptor-mediated mitophagy.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Bcl-2-like protein 13 is a mammalian Atg32 homologue that mediates mitophagy and mitochondrial fragmentation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

The ubiquitin kinase PINK1 recruits autophagy receptors to induce mitophagy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Ubiquitin is phosphorylated by PINK1 to activate parkin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

PINK1 is activated by mitochondrial membrane potential depolarization and stimulates Parkin E3 ligase activity by phosphorylating Serine 65

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

PINK1-mediated phosphorylation of the Parkin ubiquitin-like domain primes mitochondrial translocation of Parkin and regulates mitophagy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Molecular mechanism and physiological role of pexophagy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Regulation of endoplasmic reticulum turnover by selective autophagy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Receptor-mediated selective autophagy degrades the endoplasmic reticulum and the nucleus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Autophagy regulates lipid metabolism

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Spatiotemporally controlled induction of autophagy-mediated lysosome turnover

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Autophagy sequesters damaged lysosomes to control lysosomal biogenesis and kidney injury

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Selective autophagy: Lysophagy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Could uric acid have a role in acute renal failure?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Autophagy defends pancreatic β cells from human islet amyloid polypeptide-induced toxicity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Human IAPP-induced pancreatic β cell toxicity and its regulation by autophagy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Amyloidogenic peptide oligomer accumulation in autophagy-deficient β cells induces diabetes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Pathogenic lysosomal depletion in Parkinson's disease

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Alpha-synuclein induces lysosomal rupture and cathepsin dependent reactive oxygen species following endocytosis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

NLRP3 inflammasomes are required for atherogenesis and activated by cholesterol crystals

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Danon disease: clinical features, evaluation, and management

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Primary LAMP-2 deficiency causes X-linked vacuolar cardiomyopathy and myopathy (Danon disease).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Sensitization to the lysosomal cell death pathway by oncogene-induced down-regulation of lysosome-associated membrane proteins 1 and 2.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Lipofuscin: mechanisms of age-related accumulation and influence on cell function

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Mitochondrial DNA that escapes from autophagy causes inflammation and heart failure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Inhibition of autophagy in the heart induces age-related cardiomyopathy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

The role of autophagy in cardiomyocytes in the basal state and in response to hemodynamic stress

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Galectin 8 targets damaged vesicles for autophagy to defend cells against bacterial invasion

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Recruitment of the autophagic machinery to endosomes during infection is mediated by ubiquitin.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Shigella phagocytic vacuolar membrane remnants participate in the cellular response to pathogen invasion and are regulated by autophagy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

A TRP Channel Senses Lysosome Neutralization by Pathogens to Trigger Their Expulsion

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Aβ secretion and plaque formation depend on autophagy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Escape of non-enveloped virus from intact cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

The role of lysosomes in iron metabolism and recycling

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Identifying specific receptors for cargo-mediated autophagy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Quantitative proteomics identifies NCOA4 as the cargo receptor mediating ferritinophagy

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Termination of autophagy and reformation of lysosomes regulated by mTOR

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Spinster is required for autophagic lysosome reformation and mTOR reactivation following starvation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Clathrin and phosphatidylinositol-4,5-bisphosphate regulate autophagic lysosome reformation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Cell sensitivity to oxidative stress is influenced by ferritin autophagy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Autophagy: shaping the tumor microenvironment and therapeutic response.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Chloroquine in cancer therapy: a double-edged sword of autophagy.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Cellular iron metabolism in prognosis and therapy of breast cancer

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Hypoxia-induced autophagy: cell death or cell survival?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

Endoplasmic reticulum stress: cell life and death decisions.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YJMCC.2015.12.005

10.1016/J.YJMCC.2015.12.005

7 January 2021

Identifiers

DOI

1 reference

5 September 2017

1 reference