(Q38675538)

English

In silico analysis of transcription factor repertoires and prediction of stress-responsive transcription factors from six major gramineae plants

scientific article published on 04 July 2011

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scholarly article

1 reference

Europe PubMed Central

5 September 2017

In silico analysis of transcription factor repertoires and prediction of stress-responsive transcription factors from six major gramineae plants (English)

1 reference

Europe PubMed Central

5 September 2017

object named as

gramineae

1 reference

based on heuristic

inferred from title

1 reference

based on heuristic

inferred from title

6

1 reference

Europe PubMed Central

5 September 2017

Tetsuya Sakurai

object named as

Tetsuya Sakurai

3

0 references

Keiichi Mochida

object named as

Keiichi Mochida

1

0 references

Kazuo Shinozaki

object named as

Kazuo Shinozaki

5

0 references

Kazuko Yamaguchi-Shinozaki

4

object named as

Kazuko Yamaguchi-Shinozaki

1 reference

Europe PubMed Central

5 September 2017

Takuhiro Yoshida

2

object named as

Takuhiro Yoshida

1 reference

Europe PubMed Central

5 September 2017

publication date

4 July 2011

1 reference

Europe PubMed Central

5 September 2017

1 reference

Europe PubMed Central

5 September 2017

18

1 reference

Europe PubMed Central

5 September 2017

5

1 reference

Europe PubMed Central

5 September 2017

321-332

1 reference

Europe PubMed Central

5 September 2017

Field transcriptome revealed critical developmental and physiological transitions involved in the expression of growth potential in japonica rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

RiceFOX: a database of Arabidopsis mutant lines overexpressing rice full-length cDNA that contains a wide range of trait information to facilitate analysis of gene function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

Progress studies of drought-responsive genes in rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

RiceXPro: a platform for monitoring gene expression in japonica rice grown under natural field conditions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

Functional genomics of soybean for improvement of productivity in adverse conditions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

Genome-wide distribution of transposed Dissociation elements in maize.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

A platform for functional prediction and comparative analyses of transcription factors of legumes and beyond.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

Genomics and bioinformatics resources for crop improvement

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

Genome sequencing and analysis of the model grass Brachypodium distachyon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

SoyDB: a knowledge database of soybean transcription factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

The B73 Maize Genome: Complexity, Diversity, and Dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

Genevestigator v3: a reference expression database for the meta-analysis of transcriptomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

LegumeTFDB: an integrative database of Glycine max, Lotus japonicus and Medicago truncatula transcription factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

In silico analysis of transcription factor repertoire and prediction of stress responsive transcription factors in soybean

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

Development of SSR markers and analysis of diversity in Turkish populations of Brachypodium distachyon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

Phenome analysis in plant species using loss-of-function and gain-of-function mutants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

Functional analysis of transcription factors in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

TriFLDB: a database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

A census of human transcription factors: function, expression and evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

The Sorghum bicolor genome and the diversification of grasses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

DATFAP: a database of primers and homology alignments for transcription factors from 13 plant species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

Pfam 10 years on: 10,000 families and still growing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

TOBFAC: the database of tobacco transcription factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

The Rice Annotation Project Database (RAP-DB): 2008 update

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

DBD--taxonomically broad transcription factor predictions: new content and functionality

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

PlantGDB: a resource for comparative plant genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

High-efficiency Agrobacterium-mediated transformation of Brachypodium distachyon inbred line Bd21-3.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

The Arabidopsis Information Resource (TAIR): gene structure and function annotation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

PlantTFDB: a comprehensive plant transcription factor database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

Plant gene networks in osmotic stress response: from genes to regulatory networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

Legume transcription factors: global regulators of plant development and response to the environment.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

The regulatory code for transcriptional response diversity and its relation to genome structural properties in A. thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

DRTF: a database of rice transcription factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

Organization of cis-acting regulatory elements in osmotic- and cold-stress-responsive promoters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

6 September 2017

Plant cis-acting regulatory DNA elements (PLACE) database: 1999

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

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Molecular characterization of stress-inducible GmNAC genes in soybean

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

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Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

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Cis-regulatory element based targeted gene finding: genome-wide identification of abscisic acid- and abiotic stress-responsive genes in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

14 September 2017

RARTF: database and tools for complete sets of Arabidopsis transcription factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

23 June 2018

Using the Generic Genome Browser (GBrowse).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

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Molecular, morphological, and cytological analysis of diverse Brachypodium distachyon inbred lines.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

31 August 2018

Cis-element- and transcriptome-based screening of root hair-specific genes and their functional characterization in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

31 August 2018

GRASSIUS: a platform for comparative regulatory genomics across the grasses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

31 August 2018

DPTF: a database of poplar transcription factors.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

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Functional conservation of a root hair cell-specific cis-element in angiosperms with different root hair distribution patterns.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

31 August 2018

Establishing an efficient Ac/Ds tagging system in rice: large-scale analysis of Ds flanking sequences.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

31 August 2018

Sequence database of 1172 T‐DNA insertion sites in Arabidopsis activation‐tagging lines that showed phenotypes in T1 generation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190953

31 August 2018

PlanTAPDB, a phylogeny-based resource of plant transcription-associated proteins

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSR019

21 January 2018

Systematic approaches to using the FOX hunting system to identify useful rice genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/21729923

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks

1 reference

https://pubmed.ncbi.nlm.nih.gov/21729923

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1093/DNARES/DSR019

1 reference

Europe PubMed Central

5 September 2017

1 reference

Europe PubMed Central

5 September 2017

1 reference

Europe PubMed Central

5 September 2017

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