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Cracking the epitranscriptome
scientific article
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Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
4712667
retrieved
5 September 2017
title
Cracking the epitranscriptome
(English)
1 reference
stated in
Europe PubMed Central
PMCID
4712667
retrieved
5 September 2017
author
Schraga Schwartz
series ordinal
1
object named as
Schraga Schwartz
0 references
language of work or name
English
0 references
publication date
1 February 2016
1 reference
stated in
Europe PubMed Central
PMCID
4712667
retrieved
5 September 2017
published in
RNA
1 reference
stated in
Europe PubMed Central
PMCID
4712667
retrieved
5 September 2017
volume
22
1 reference
stated in
Europe PubMed Central
PMCID
4712667
retrieved
5 September 2017
issue
2
1 reference
stated in
Europe PubMed Central
PMCID
4712667
retrieved
5 September 2017
page(s)
169-174
1 reference
stated in
Europe PubMed Central
PMCID
4712667
retrieved
5 September 2017
cites work
A majority of m6A residues are in the last exons, allowing the potential for 3' UTR regulation
1 reference
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PubMed Central
reference URL
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retrieved
6 September 2017
HNRNPA2B1 Is a Mediator of m(6)A-Dependent Nuclear RNA Processing Events
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
N(6)-methyladenosine Modulates Messenger RNA Translation Efficiency
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
N6-methyladenosine marks primary microRNAs for processing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
N(6)-methyladenosine-dependent RNA structural switches regulate RNA-protein interactions
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
Stem cells. m6A mRNA methylation facilitates resolution of naïve pluripotency toward differentiation
1 reference
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PubMed Central
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6 September 2017
m(6)A RNA modification controls cell fate transition in mammalian embryonic stem cells
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
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6 September 2017
FTO-dependent demethylation of N6-methyladenosine regulates mRNA splicing and is required for adipogenesis
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
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6 September 2017
Crystal structure of the YTH domain of YTHDF2 reveals mechanism for recognition of N6-methyladenosine
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
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6 September 2017
Structure of the YTH domain of human YTHDF2 in complex with an m(6)A mononucleotide reveals an aromatic cage for m(6)A recognition
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
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6 September 2017
Transcriptome-wide mapping of pseudouridines: pseudouridine synthases modify specific mRNAs in S. cerevisiae
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PubMed Central
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6 September 2017
Transcriptome-wide mapping reveals widespread dynamic-regulated pseudouridylation of ncRNA and mRNA.
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PubMed Central
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6 September 2017
Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
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6 September 2017
Perturbation of m6A writers reveals two distinct classes of mRNA methylation at internal and 5' sites
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
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6 September 2017
Mammalian WTAP is a regulatory subunit of the RNA N6-methyladenosine methyltransferase
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
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6 September 2017
N6-methyladenosine modification destabilizes developmental regulators in embryonic stem cells
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
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6 September 2017
A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
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6 September 2017
A METTL3-METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylation
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PubMed Central
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6 September 2017
N6-methyladenosine-dependent regulation of messenger RNA stability
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
RNA-methylation-dependent RNA processing controls the speed of the circadian clock
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
Probing N6-methyladenosine RNA modification status at single nucleotide resolution in mRNA and long noncoding RNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
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6 September 2017
Identification of Wilms' tumor 1-associating protein complex and its role in alternative splicing and the cell cycle
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
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6 September 2017
NSun2-mediated cytosine-5 methylation of vault noncoding RNA determines its processing into regulatory small RNAs
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PubMed Central
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6 September 2017
Transcriptome-wide mapping of 5-methylcytidine RNA modifications in bacteria, archaea, and yeast reveals m5C within archaeal mRNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
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6 September 2017
The fat mass and obesity associated gene (Fto) regulates activity of the dopaminergic midbrain circuitry
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stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
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6 September 2017
Identification of direct targets and modified bases of RNA cytosine methyltransferases
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
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6 September 2017
RNA-guided human genome engineering via Cas9
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PubMed Central
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6 September 2017
Multiplex genome engineering using CRISPR/Cas systems
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
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6 September 2017
ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
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6 September 2017
MODOMICS: a database of RNA modification pathways--2013 update
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
The birth of the Epitranscriptome: deciphering the function of RNA modifications
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
RNA methylation by the MIS complex regulates a cell fate decision in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
Adenosine Methylation in Arabidopsis mRNA is Associated with the 3' End and Reduced Levels Cause Developmental Defects
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
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6 September 2017
Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
Drosophila Inducer of MEiosis 4 (IME4) is required for Notch signaling during oogenesis
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
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6 September 2017
Grand challenge commentary: RNA epigenetics?
1 reference
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PubMed Central
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6 September 2017
Loss-of-function mutation in the dioxygenase-encoding FTO gene causes severe growth retardation and multiple malformations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
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6 September 2017
Inactivation of the Fto gene protects from obesity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
MTA is an Arabidopsis messenger RNA adenosine methylase and interacts with a homolog of a sex-specific splicing factor
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
Wilms' tumor 1-associating protein regulates G2/M transition through stabilization of cyclin A2 mRNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
Pseudouridylation at position 32 of mitochondrial and cytoplasmic tRNAs requires two distinct enzymes in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
Systematic identification of abundant A-to-I editing sites in the human transcriptome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
Induction of sporulation in Saccharomyces cerevisiae leads to the formation of N6-methyladenosine in mRNA: a potential mechanism for the activity of the IME4 gene
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
Comparative genomics and evolution of proteins involved in RNA metabolism
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
Point mutations in yeast CBF5 can abolish in vivo pseudouridylation of rRNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
Purification and cDNA cloning of the AdoMet-binding subunit of the human mRNA (N6-adenosine)-methyltransferase
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
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6 September 2017
Temperature-sensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation, and ribosome assembly
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
Context effects on N6-adenosine methylation sites in prolactin mRNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
Identification of methylated nucleosides in messenger RNA from Novikoff hepatoma cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
IME4, a gene that mediates MAT and nutritional control of meiosis in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
5'-Terminal and internal methylated nucleotide sequences in HeLa cell mRNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
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6 September 2017
Methylated simian virus 40-specific RNA from nuclei and cytoplasm of infected BSC-1 cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
retrieved
6 September 2017
m(6)A RNA methylation is regulated by microRNAs and promotes reprogramming to pluripotency
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
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6 September 2017
Methylated nucleotides block 5' terminus of HeLa cell messenger RNA.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712667
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14 September 2017
Structural imprints in vivo decode RNA regulatory mechanisms
1 reference
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PubMed Central
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25 September 2017
Methylation and processing of ribosomal RNA in HeLa cells
1 reference
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/26787305
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The expression of PHO92 is regulated by Gcr1, and Pho92 is involved in glucose metabolism in Saccharomyces cerevisiae
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/26787305
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Ribonucleic acids from yeast which contain a fifth nucleotide
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/26787305
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1261/RNA.054502.115
1 reference
stated in
Europe PubMed Central
PMCID
4712667
retrieved
5 September 2017
PMCID
4712667
1 reference
stated in
Europe PubMed Central
PMCID
4712667
retrieved
5 September 2017
PubMed ID
26787305
1 reference
stated in
Europe PubMed Central
PMCID
4712667
retrieved
5 September 2017
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