(Q38795604)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28486689%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

title

The PhytoClust tool for metabolic gene clusters discovery in plant genomes (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28486689%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

author name string

Lisa-Maria Fuchs

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28486689%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

language of work or name

English

0 references

publication date

1 July 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28486689%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28486689%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

volume

45

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28486689%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

issue

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28486689%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

page(s)

7049-7063

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28486689%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial 4.0 International

20 March 2020

copyright license

start time

9 May 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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A Metabolic Gene Cluster in the Wheat W1 and the Barley Cer-cqu Loci Determines β-Diketone Biosynthesis and Glaucousness.

6 September 2017

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Plant metabolic clusters - from genetics to genomics

6 September 2017

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The Pfam protein families database: towards a more sustainable future

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Ensembl Genomes 2016: more genomes, more complexity

6 September 2017

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6 September 2017

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Engineering of Secondary Metabolism

6 September 2017

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antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters

6 September 2017

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Investigation of terpene diversification across multiple sequenced plant genomes

6 September 2017

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Plant science. Biosynthesis, regulation, and domestication of bitterness in cucumber

6 September 2017

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6 September 2017

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6 September 2017

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The rise of operon-like gene clusters in plants

6 September 2017

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A Papaver somniferum 10-gene cluster for synthesis of the anticancer alkaloid noscapine

6 September 2017

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Metabolic engineering for the production of natural products.

6 September 2017

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Accelerated Profile HMM Searches

6 September 2017

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Formation of plant metabolic gene clusters within dynamic chromosomal regions.

6 September 2017

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Multiple reference genomes and transcriptomes for Arabidopsis thaliana

6 September 2017

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Genome sequence and analysis of the tuber crop potato

6 September 2017

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From hormones to secondary metabolism: the emergence of metabolic gene clusters in plants

6 September 2017

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Field transcriptome revealed critical developmental and physiological transitions involved in the expression of growth potential in japonica rice

6 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499548

Gene clusters for secondary metabolic pathways: an emerging theme in plant biology

6 September 2017

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Elucidation of the final reactions of DIMBOA-glucoside biosynthesis in maize: characterization of Bx6 and Bx7

6 September 2017

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PlantGDB: a resource for comparative plant genomics

6 September 2017

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Identification of a biosynthetic gene cluster in rice for momilactones.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499548

Gramene: a bird's eye view of cereal genomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499548

The secondary metabolism of Arabidopsis thaliana: growing like a weed

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499548

Identification of syn-pimara-7,15-diene synthase reveals functional clustering of terpene synthases involved in rice phytoalexin/allelochemical biosynthesis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499548

Two glucosyltransferases are involved in detoxification of benzoxazinoids in maize

6 September 2017

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Analysis of a chemical plant defense mechanism in grasses

6 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499548

Bioinformatics tools for the identification of gene clusters that biosynthesize specialized metabolites

6 September 2017

1 reference

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Biosynthesis of antinutritional alkaloids in solanaceous crops is mediated by clustered genes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499548

antiSMASH 2.0--a versatile platform for genome mining of secondary metabolite producers

22 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499548

Evolutionary trajectory of phytoalexin biosynthetic gene clusters in rice

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499548

Production of bioactive diterpenoids in the euphorbiaceae depends on evolutionarily conserved gene clusters.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499548

Genomic signatures of specialized metabolism in plants

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499548

Evolution of a complex locus for terpene biosynthesis in solanum

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499548

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499548

Metabolic diversification--independent assembly of operon-like gene clusters in different plants.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499548

TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499548

A 2-oxoglutarate-dependent dioxygenase is integrated in DIMBOA-biosynthesis

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5499548

Genetics and biochemistry of secondary metabolites in plants: an evolutionary perspective

31 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKX404

Nature's chemicals. The natural products that shaped our world

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKX404

A P450-centric view of plant evolution

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKX404

Differential metabolic and coexpression networks of plant metabolism

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28486689

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Prediction of operon-like gene clusters in the Arabidopsis thaliana genome based on co-expression analysis of neighboring genes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28486689

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKX404

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28486689%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28486689%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

PubMed publication ID

28486689

1 reference