(Q38817542)

English

The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota

scientific article published on 8 August 2016

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

6 September 2017

The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota (English)

1 reference

Europe PubMed Central

6 September 2017

corrigendum / erratum

Erratum: Corrigendum: The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota

0 references

21

1 reference

Europe PubMed Central

6 September 2017

25

1 reference

Europe PubMed Central

6 September 2017

Bärbel Stecher

object named as

Bärbel Stecher

27

0 references

Ilias Lagkouvardos

object named as

Ilias Lagkouvardos

1

0 references

object named as

Thomas Clavel

28

0 references

object named as

Jens Walter

22

0 references

Bärbel U Foesel

4

object named as

Bärbel U Foesel

1 reference

Europe PubMed Central

6 September 2017

26

object named as

Jörg Overmann

1 reference

Europe PubMed Central

6 September 2017

Rüdiger Pukall

2

object named as

Rüdiger Pukall

1 reference

Europe PubMed Central

6 September 2017

Mathias W Hornef

object named as

Mathias W Hornef

19

0 references

author name string

Birte Abt

3

1 reference

Europe PubMed Central

6 September 2017

Neeraj Kumar

6

1 reference

Europe PubMed Central

6 September 2017

Anne Bresciani

7

1 reference

Europe PubMed Central

6 September 2017

Inés Martínez

8

1 reference

Europe PubMed Central

6 September 2017

Sarah Just

9

1 reference

Europe PubMed Central

6 September 2017

Caroline Ziegler

10

1 reference

Europe PubMed Central

6 September 2017

Sandrine Brugiroux

11

1 reference

Europe PubMed Central

6 September 2017

Debora Garzetti

12

1 reference

Europe PubMed Central

6 September 2017

Mareike Wenning

13

1 reference

Europe PubMed Central

6 September 2017

Thi P N Bui

14

1 reference

Europe PubMed Central

6 September 2017

Jun Wang

15

1 reference

Europe PubMed Central

6 September 2017

Floor Hugenholtz

16

1 reference

Europe PubMed Central

6 September 2017

Caroline M Plugge

17

1 reference

Europe PubMed Central

6 September 2017

Daniel A Peterson

18

1 reference

Europe PubMed Central

6 September 2017

John F Baines

20

1 reference

Europe PubMed Central

6 September 2017

Karsten Kristiansen

23

1 reference

Europe PubMed Central

6 September 2017

Henrik B Nielsen

24

1 reference

Europe PubMed Central

6 September 2017

publication date

8 August 2016

1 reference

Europe PubMed Central

6 September 2017

Nature Microbiology

1 reference

Europe PubMed Central

6 September 2017

1

1 reference

Europe PubMed Central

6 September 2017

16131

1 reference

Europe PubMed Central

6 September 2017

10

1 reference

Europe PubMed Central

6 September 2017

https://scigraph.springernature.com/pub.10.1038/nmicrobiol.2016.131

0 references

The anaerobic bacterial flora of the mouse cecum

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Optimized Illumina PCR-free library preparation for bacterial whole genome sequencing and analysis of factors influencing de novo assembly

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A proposed genus boundary for the prokaryotes based on genomic insights

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Prokka: rapid prokaryotic genome annotation

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

UPARSE: highly accurate OTU sequences from microbial amplicon reads

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of the inhabitancy of mouse intestinal bacteria (MIB) in rodents and humans by real-time PCR with group-specific primers

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Isolation of bacteria from mouse caecal samples and description of Bacteroides sartorii sp. nov.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of 16S libraries of mouse gastrointestinal microflora reveals a large new group of mouse intestinal bacteria.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Fast and accurate phylogeny reconstruction algorithms based on the minimum-evolution principle

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Use of anaerobic glove boxes for the cultivation of strictly anaerobic bacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MEGA6: Molecular Evolutionary Genetics Analysis version 6.0

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogeny, culturing, and metagenomics of the human gut microbiota

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

BacDive – The Bacterial Diversity Metadatabase in 2016

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Formation of a clear zone on tannin-treated brain heart infusion agar by a Streptococcus sp. isolated from feces of koalas.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Extensive strain-level copy-number variation across human gut microbiome species

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effects of diet on resource utilization by a model human gut microbiota containing Bacteroides cellulosilyticus WH2, a symbiont with an extensive glycobiome

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Heterogeneity of the gut microbiome in mice: guidelines for optimizing experimental design

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Taxonomic use of DNA G+C content and DNA-DNA hybridization in the genomic age.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Responses in colonic microbial community and gene expression of pigs to a long-term high resistant starch diet

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Draft genome sequences of the altered schaedler flora, a defined bacterial community from gnotobiotic mice

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gut metabolites and bacterial community networks during a pilot intervention study with flaxseeds in healthy adult men.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Integrating metagenomic and amplicon databases to resolve the phylogenetic and ecological diversity of the Chlamydiae

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxy acids.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bacteria from diverse habitats colonize and compete in the mouse gut.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Isolation of bacteria from the ileal mucosa of TNFdeltaARE mice and description of Enterorhabdus mucosicola gen. nov., sp. nov.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Whole-genome prokaryotic phylogeny

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The mouse gut microbiome revisited: From complex diversity to model ecosystems.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ASSOCIATION OF GERMFREE MICE WITH BACTERIA ISOLATED FROM NORMAL MICE

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome sequence-based species delimitation with confidence intervals and improved distance functions

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A comprehensive repertoire of prokaryotic species identified in human beings

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNAmmer: consistent and rapid annotation of ribosomal RNA genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Diet-induced metabolic improvements in a hamster model of hypercholesterolemia are strongly linked to alterations of the gut microbiota

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

How informative is the mouse for human gut microbiota research?

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Abundant and diverse fungal microbiota in the murine intestine

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

QUAST: quality assessment tool for genome assemblies

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Human intestinal microbiota: characterization of a simplified and stable gnotobiotic rat model.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Search and clustering orders of magnitude faster than BLAST

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bacteroides acidifaciens sp. nov., isolated from the caecum of mice

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Standardised animal models of host microbial mutualism

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

BLAST+: architecture and applications

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Kraken: ultrafast metagenomic sequence classification using exact alignments

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dietary history contributes to enterotype-like clustering and functional metagenomic content in the intestinal microbiome of wild mice.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

When should a DDH experiment be mandatory in microbial taxonomy?

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Sequence Read Archive: explosive growth of sequencing data.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interleukin-1β (IL-1β) promotes susceptibility of Toll-like receptor 5 (TLR5) deficient mice to colitis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gut immune maturation depends on colonization with a host-specific microbiota

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

IMG ER: a system for microbial genome annotation expert review and curation

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Culturing of 'unculturable' human microbiota reveals novel taxa and extensive sporulation.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A catalog of the mouse gut metagenome

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Production of butyrate from lysine and the Amadori product fructoselysine by a human gut commensal

1 reference

https://pubmed.ncbi.nlm.nih.gov/27670113

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Streptococcus danieliae sp. nov., a novel bacterium isolated from the caecum of a mouse.

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.131

7 January 2021

based on heuristic

inferred from DOI database lookup

Parvibacter caecicola gen. nov., sp. nov., a bacterium of the family Coriobacteriaceae isolated from the caecum of a mouse

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.131

7 January 2021

based on heuristic

inferred from DOI database lookup

Enterorhabdus caecimuris sp. nov., a member of the family Coriobacteriaceae isolated from a mouse model of spontaneous colitis, and emended description of the genus Enterorhabdus Clavel et al. 2009.

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.131

7 January 2021

based on heuristic

inferred from DOI database lookup

Intestinimonas butyriciproducens gen. nov., sp. nov., a butyrate-producing bacterium from the mouse intestine.

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.131

7 January 2021

based on heuristic

inferred from DOI database lookup

Murimonas intestini gen. nov., sp. nov., an acetate-producing bacterium of the family Lachnospiraceae isolated from the mouse gut.

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.131

7 January 2021

based on heuristic

inferred from DOI database lookup

Acetatifactor muris gen. nov., sp. nov., a novel bacterium isolated from the intestine of an obese mouse

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.131

7 January 2021

based on heuristic

inferred from DOI database lookup

Lactobacillus rodentium sp. nov., from the digestive tract of wild rodents.

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.131

7 January 2021

based on heuristic

inferred from DOI database lookup

Lactobacillus apodemi sp. nov., a tannase-producing species isolated from wild mouse faeces

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.131

7 January 2021

based on heuristic

inferred from DOI database lookup

Taxonomic Study of Helically Coiled, Sporeforming Anaerobes Isolated from the Intestines of Humans and Other Animals: Clostridium cocleatum sp. nov. and Clostridium spiroforme sp. nov.

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.131

7 January 2021

based on heuristic

inferred from DOI database lookup

MALDI-TOF Mass Spectrometry Applied to Classification and Identification of Bacteria

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.131

7 January 2021

based on heuristic

inferred from DOI database lookup

Peptidoglycan Structure

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.131

7 January 2021

based on heuristic

inferred from DOI database lookup

Fatty Acids, Antibiotic Resistance, and Deoxyribonucleic Acid Homology Groups of Bradyrhizobium japonicum

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.131

7 January 2021

based on heuristic

inferred from DOI database lookup

In vivo selection to identify bacterial strains with enhanced ecological performance in synbiotic applications.

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.131

7 January 2021

based on heuristic

inferred from DOI database lookup

Highly parallelized inference of large genome-based phylogenies

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.131

7 January 2021

based on heuristic

inferred from DOI database lookup

Rhizobium rhizolycopersici sp. nov., Isolated from the Rhizosphere Soil of Tomato Plants in China

1 reference

https://api.crossref.org/works/10.1038%2FNMICROBIOL.2016.131

7 January 2021

based on heuristic

inferred from DOI database lookup

Identifiers

10.1038/NMICROBIOL.2016.131

1 reference

Europe PubMed Central

6 September 2017

Dimensions Publication ID

0 references

release_zwv5j462trcdheugxazhx7ueyq

1 reference

https://api.fatcat.wiki/v0/release/zwv5j462trcdheugxazhx7ueyq

24 November 2022

based on heuristic

mapped directly with Wikidata item

1 reference

Europe PubMed Central

6 September 2017

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q38817542&oldid=1959738491"