(Q38926100)

7 September 2017

Dissecting neural differentiation regulatory networks through epigenetic footprinting (English)

1 reference

7 September 2017

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Jeffrey C Xing

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

John L. Rinn

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

16

Tarjei S Mikkelsen

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

18

Andreas Gnirke

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

9

Alon Goren

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

17

Oliver Kohlbacher

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

8

Casey A Gifford

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

19

Bradley E Bernstein

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

author name string

Michael J Ziller

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Reuven Edri

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Yakey Yaffe

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Julie Donaghey

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Ramona Pop

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

William Mallard

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Hongcang Gu

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Davide Cachiarelli

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Alexander Tsankov

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Chuck Epstein

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Yechiel Elkabetz

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Alexander Meissner

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

language of work or name

English

0 references

publication date

24 December 2014

1 reference

7 September 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

volume

518

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

issue

7539

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

page(s)

355-359

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1038/nature13990

12 June 2020

exact match

0 references

cites work

Analysing human neural stem cell ontogeny by consecutive isolation of Notch active neural progenitors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

edgeR: a versatile tool for the analysis of shRNA-seq and CRISPR-Cas9 genetic screens

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Leveraging cross-species transcription factor binding site patterns: from diabetes risk loci to disease mechanisms

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Dynamic regulation of transcriptional states by chromatin and transcription factors.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Charting a dynamic DNA methylation landscape of the human genome

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

The Xist lncRNA exploits three-dimensional genome architecture to spread across the X chromosome

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Transcriptional and epigenetic dynamics during specification of human embryonic stem cells

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

DNA-binding specificities of human transcription factors

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Differential analysis of gene regulation at transcript resolution with RNA-seq

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA methylation profiling

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Systematic localization of common disease-associated variation in regulatory DNA

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

An expansive human regulatory lexicon encoded in transcription factor footprints

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

The accessible chromatin landscape of the human genome

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

An integrated encyclopedia of DNA elements in the human genome

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Optimized PCR conditions and increased shRNA fold representation improve reproducibility of pooled shRNA screens

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Fast gapped-read alignment with Bowtie 2

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Differential oestrogen receptor binding is associated with clinical outcome in breast cancer

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

High-throughput RNA interference screening using pooled shRNA libraries and next generation sequencing

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

REST and CoREST are transcriptional and epigenetic regulators of seminal neural fate decisions

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Comparative epigenomic analysis of murine and human adipogenesis

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

GREAT improves functional interpretation of cis-regulatory regions

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

BSMAP: whole genome bisulfite sequence MAPping program

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

TopHat: discovering splice junctions with RNA-Seq

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Highly efficient neural conversion of human ES and iPS cells by dual inhibition of SMAD signaling

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Forebrain ependymal cells are Notch-dependent and generate neuroblasts and astrocytes after stroke

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Highly parallel identification of essential genes in cancer cells

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Model-based analysis of ChIP-Seq (MACS)

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Mapping short DNA sequencing reads and calling variants using mapping quality scores

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Statistical modeling of transcription factor binding affinities predicts regulatory interactions

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

COUP-TFI coordinates cortical patterning, neurogenesis, and laminar fate and modulates MAPK/ERK, AKT, and beta-catenin signaling.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Quantifying similarity between motifs

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

MEME: discovering and analyzing DNA and protein sequence motifs

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Partial least squares: a versatile tool for the analysis of high-dimensional genomic data

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Predicting transcription factor activities from combined analysis of microarray and ChIP data: a partial least squares approach

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

A focused and efficient genetic screening strategy in the mouse: identification of mutations that disrupt cortical development

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Foxg1 suppresses early cortical cell fate

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Graded phenotypic response to partial and complete deficiency of a brain-specific transcript variant of the winged helix transcription factor RFX4

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Regionalisation of anterior neuroectoderm and its competence in responding to forebrain and midbrain inducing activities depend on mutual antagonism between OTX2 and GBX2

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

COUP-TFI: an intrinsic factor for early regionalization of the neocortex

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Quantifying the effect of sequence variation on regulatory interactions

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

BAC transgenesis in human embryonic stem cells as a novel tool to define the human neural lineage.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

A role for SOX1 in neural determination

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Pax6 controls radial glia differentiation in the cerebral cortex

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Dynamic expression of notch signaling genes in neural stem/progenitor cells

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

NFIA controls telencephalic progenitor cell differentiation through repression of the Notch effector Hes1.

22 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Essential roles of Notch signaling in maintenance of neural stem cells in developing and adult brains.

22 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Human ES cell-derived neural rosettes reveal a functionally distinct early neural stem cell stage

22 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

A statistical analysis of the TRANSFAC database.

22 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4336237

Development and evolution of the human neocortex

22 August 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE13990

Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE13990

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE13990

SIMPLS: An alternative approach to partial least squares regression

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE13990

Expression of the bHLH transcription factor Tcf12 (ME1) gene is linked to the expansion of precursor cell populations during neurogenesis

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25533951

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Impaired intrinsic immunity to HSV-1 in human iPSC-derived TLR3-deficient CNS cells

1 reference

https://api.crossref.org/works/10.1038%2FNATURE13990

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NATURE13990

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

12 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25533951%20AND%20SRC:MED&resulttype=core&format=json