(Q39150228)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28873412%20AND%20SRC:MED&resulttype=core&format=json

29 March 2020

title

Temporal phylogeography of Yersinia pestis in Madagascar: Insights into the long-term maintenance of plague (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28873412%20AND%20SRC:MED&resulttype=core&format=json

29 March 2020

0 references

0 references

0 references

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28873412%20AND%20SRC:MED&resulttype=core&format=json

29 March 2020

David M Wagner

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28873412%20AND%20SRC:MED&resulttype=core&format=json

29 March 2020

6

Crystal M Hepp

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28873412%20AND%20SRC:MED&resulttype=core&format=json

29 March 2020

12

Paul Keim

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28873412%20AND%20SRC:MED&resulttype=core&format=json

29 March 2020

author name string

Amy J Vogler

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28873412%20AND%20SRC:MED&resulttype=core&format=json

29 March 2020

Voahangy Andrianaivoarimanana

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28873412%20AND%20SRC:MED&resulttype=core&format=json

29 March 2020

Carina M Hall

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28873412%20AND%20SRC:MED&resulttype=core&format=json

29 March 2020

Jason W Sahl

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28873412%20AND%20SRC:MED&resulttype=core&format=json

29 March 2020

Heather Centner

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28873412%20AND%20SRC:MED&resulttype=core&format=json

29 March 2020

Genevieve Andersen

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28873412%20AND%20SRC:MED&resulttype=core&format=json

29 March 2020

Dawn N Birdsell

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28873412%20AND%20SRC:MED&resulttype=core&format=json

29 March 2020

Lila Rahalison

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28873412%20AND%20SRC:MED&resulttype=core&format=json

29 March 2020

Roxanne Nottingham

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28873412%20AND%20SRC:MED&resulttype=core&format=json

29 March 2020

Minoarisoa Rajerison

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28873412%20AND%20SRC:MED&resulttype=core&format=json

29 March 2020

language of work or name

English

0 references

publication date

5 September 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28873412%20AND%20SRC:MED&resulttype=core&format=json

PLoS Neglected Tropical Diseases

29 March 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28873412%20AND%20SRC:MED&resulttype=core&format=json

29 March 2020

volume

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28873412%20AND%20SRC:MED&resulttype=core&format=json

29 March 2020

issue

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28873412%20AND%20SRC:MED&resulttype=core&format=json

29 March 2020

page(s)

e0005887

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28873412%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons CC0 License

29 March 2020

copyright license

start time

5 September 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

0 references

describes a project that uses

ArcGIS

object named as

ArcGIS

2 references

18 June 2022

https://europepmc.org/article/PMC/5600411

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats.

1 reference

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Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen).

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5600411

KlebSeq, a Diagnostic Tool for Surveillance, Detection, and Monitoring of Klebsiella pneumoniae

17 June 2018

1 reference

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Early divergent strains of Yersinia pestis in Eurasia 5,000 years ago

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5600411

Diverse Genotypes of Yersinia pestis Caused Plague in Madagascar in 2007

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5600411

Detection of Low-Level Mixed-Population Drug Resistance in Mycobacterium tuberculosis Using High Fidelity Amplicon Sequencing

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5600411

New insights into dissemination and variation of the health care-associated pathogen Acinetobacter baumannii from genomic analysis

17 June 2018

1 reference

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Understanding the persistence of plague foci in Madagascar

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5600411

Plague circulation and population genetics of the reservoir Rattus rattus: the influence of topographic relief on the distribution of the disease within the Madagascan focus

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5600411

A decade of plague in Mahajanga, Madagascar: insights into the global maritime spread of pandemic plague

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5600411

Evolution of a pathogen: a comparative genomics analysis identifies a genetic pathway to pathogenesis in Acinetobacter

17 June 2018

1 reference

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Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5600411

Accurate model selection of relaxed molecular clocks in bayesian phylogenetics

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5600411

Primer3--new capabilities and interfaces

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5600411

Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5600411

Bayesian phylogenetics with BEAUti and the BEAST 1.7

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5600411

Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5600411

A framework for variation discovery and genotyping using next-generation DNA sequencing data

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5600411

Improving marginal likelihood estimation for Bayesian phylogenetic model selection

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5600411

Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity

17 June 2018

1 reference

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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

17 June 2018

1 reference

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Assessing human risk of exposure to plague bacteria in northwestern Uganda based on remotely sensed predictors

17 June 2018

1 reference

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Study on the movement of Rattus rattus and evaluation of the plague dispersion in Madagascar

17 June 2018

1 reference

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Humans and evolutionary and ecological forces shaped the phylogeography of recently emerged diseases

17 June 2018

1 reference

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The Sequence Alignment/Map format and SAMtools

17 June 2018

1 reference

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Phylogenetic understanding of clonal populations in an era of whole genome sequencing

17 June 2018

1 reference

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Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics

17 June 2018

1 reference

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Enhancements and modifications of primer design program Primer3.

17 June 2018

1 reference

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Epidemiological trends for human plague in Madagascar during the second half of the 20th century: a survey of 20,900 notified cases

17 June 2018

1 reference

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17 June 2018

1 reference

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From the recent lessons of the Malagasy foci towards a global understanding of the factors involved in plague reemergence

17 June 2018

1 reference

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Differential plague-transmission dynamics determine Yersinia pestis population genetic structure on local, regional, and global scales

17 June 2018

1 reference

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Susceptibility to plague of the rodents in Antananarivo, Madagascar

17 June 2018

1 reference

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Epidemiologic features of four successive annual outbreaks of bubonic plague in Mahajanga, Madagascar

17 June 2018

1 reference

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17 June 2018

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Genome sequence of Yersinia pestis, the causative agent of plague

17 June 2018

1 reference

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17 June 2018

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Plague, a reemerging disease in Madagascar

17 June 2018

1 reference

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Urban epidemic of bubonic plague in Majunga, Madagascar: epidemiological aspects

17 June 2018

1 reference

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Yersinia pestis--etiologic agent of plague

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5600411

Using MUMmer to identify similar regions in large sequence sets.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5600411

Plague in Majunga, Madagascar.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5600411

A new look at the statistical model identification

21 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0005887

Multimodel Inference: Understanding AIC and BIC in Model Selection

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0005887

Plague around the world, 2010–2015

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28873412

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PNTD.0005887

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28873412%20AND%20SRC:MED&resulttype=core&format=json

29 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28873412%20AND%20SRC:MED&resulttype=core&format=json

29 March 2020

PubMed publication ID

28873412

1 reference