(Q39596997)

English

Highly conserved elements discovered in vertebrates are present in non-syntenic loci of tunicates, act as enhancers and can be transcribed during development

scientific article published on 7 February 2013

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

13 September 2017

Highly conserved elements discovered in vertebrates are present in non-syntenic loci of tunicates, act as enhancers and can be transcribed during development (English)

1 reference

Europe PubMed Central

PMC publication ID

13 September 2017

16

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13 September 2017

1

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9

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object named as

Swaraj Basu

8

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object named as

Yavor Hadzhiev

2

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Patrick Lemaire

object named as

Patrick Lemaire

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object named as

Sandro Banfi

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13

object named as

Uwe Strähle

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13 September 2017

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author name string

Marion Gueroult-Bellone

3

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13 September 2017

Agnes Roure

4

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13 September 2017

Marco Ferg

5

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13 September 2017

Nicola Meola

6

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13 September 2017

Gabriele Amore

7

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13 September 2017

Marco De Simone

10

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13 September 2017

Francesca Petrera

11

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13 September 2017

Danilo Licastro

12

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13 September 2017

Ferenc Müller

17

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13 September 2017

language of work or name

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publication date

7 February 2013

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13 September 2017

Nucleic Acids Research

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13 September 2017

41

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Europe PubMed Central

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13 September 2017

6

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Europe PubMed Central

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13 September 2017

3600-3618

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Europe PubMed Central

PMC publication ID

13 September 2017

copyright license

Creative Commons Attribution-NonCommercial 3.0 Unported

12 May 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

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The UCSC Genome Browser database: extensions and updates 2013.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616699

14 September 2017

Landscape of transcription in human cells

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Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution

1 reference

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14 September 2017

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

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Evolution of anterior Hox regulatory elements among chordates

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14 September 2017

Transphyletic conservation of developmental regulatory state in animal evolution

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Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate

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The ANISEED database: digital representation, formalization, and elucidation of a chordate developmental program.

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A large fraction of extragenic RNA pol II transcription sites overlap enhancers

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Widespread transcription at neuronal activity-regulated enhancers

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Promiscuity of enhancer, coding and non-coding transcription functions in ultraconserved elements

1 reference

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14 September 2017

Exonic remnants of whole-genome duplication reveal cis-regulatory function of coding exons

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Conserved noncoding elements and the evolution of animal body plans

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The genetic signatures of noncoding RNAs

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The evolution of Fox genes and their role in development and disease

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14 September 2017

Functional autonomy of distant-acting human enhancers

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The amphioxus genome and the evolution of the chordate karyotype

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14 September 2017

The amphioxus genome illuminates vertebrate origins and cephalochordate biology

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14 September 2017

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14 September 2017

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14 September 2017

A multicassette Gateway vector set for high throughput and comparative analyses in ciona and vertebrate embryos

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Thousands of human mobile element fragments undergo strong purifying selection near developmental genes

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14 September 2017

Parallel evolution of conserved non-coding elements that target a common set of developmental regulatory genes from worms to humans

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Identification and characterization of microRNAs expressed in the mouse eye.

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In vivo enhancer analysis of human conserved non-coding sequences

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Specification of the neural crest occurs during gastrulation and requires Pax7

1 reference

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14 September 2017

Repeated morphological evolution through cis-regulatory changes in a pleiotropic gene

1 reference

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14 September 2017

Tunicates and not cephalochordates are the closest living relatives of vertebrates

1 reference

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14 September 2017

Homeotic factor ATBF1 induces the cell cycle arrest associated with neuronal differentiation

1 reference

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14 September 2017

HMG proteins: dynamic players in gene regulation and differentiation

1 reference

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14 September 2017

Sox21 promotes the progression of vertebrate neurogenesis.

1 reference

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14 September 2017

The many faces of the helix-turn-helix domain: transcription regulation and beyond

1 reference

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14 September 2017

Highly conserved non-coding sequences are associated with vertebrate development

1 reference

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Ciona intestinalis Hox gene cluster: Its dispersed structure and residual colinear expression in development

1 reference

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14 September 2017

Ultraconserved Elements in the Human Genome

1 reference

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14 September 2017

FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes

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14 September 2017

Fast and sensitive multiple alignment of large genomic sequences

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14 September 2017

Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes

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Glocal alignment: finding rearrangements during alignment

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14 September 2017

DAVID: Database for Annotation, Visualization, and Integrated Discovery

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14 September 2017

LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA

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14 September 2017

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14 September 2017

TFBS: Computational framework for transcription factor binding site analysis

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14 September 2017

VISTA : visualizing global DNA sequence alignments of arbitrary length

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14 September 2017

Primer3 on the WWW for general users and for biologist programmers

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Symmetries throughout organic evolution

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1 reference

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1 reference

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14 September 2017

Gene Regulation for Higher Cells: A Theory

1 reference

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14 September 2017

Systematic analysis of embryonic expression profiles of zinc finger genes in Ciona intestinalis.

1 reference

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14 September 2017

Making very similar embryos with divergent genomes: conservation of regulatory mechanisms of Otx between the ascidians Halocynthia roretzi and Ciona intestinalis.

1 reference

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14 September 2017

Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention

1 reference

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17 June 2018

Shuffling of cis-regulatory elements is a pervasive feature of the vertebrate lineage

1 reference

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17 June 2018

Promoter shuffling has occurred during the evolution of the vertebrate growth hormone gene

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17 June 2018

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1 reference

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17 June 2018

Limited functions of Hox genes in the larval development of the ascidian Ciona intestinalis.

1 reference

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21 August 2018

Highly divergent gene expression programs can lead to similar chordate larval body plans.

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Flexibility of transcription factor target site position in conserved cis-regulatory modules

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21 August 2018

Developmental expression and transcriptional regulation of Ci-Pans, a novel neural marker gene of the ascidian, Ciona intestinalis.

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21 August 2018

Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates

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21 August 2018

Loss of ancestral genes in the genomic evolution of Ciona intestinalis.

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21 August 2018

Enhancer sequence conservation between vertebrates is favoured in developmental regulator genes

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21 August 2018

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Conservation and elaboration of Hox gene regulation during evolution of the vertebrate head.

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21 August 2018

Characterization of a notochord-specific enhancer from the Brachyury promoter region of the ascidian, Ciona intestinalis.

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21 August 2018

Molecular pathways to parallel evolution: I. Gene nexuses and their morphological correlates.

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21 August 2018

Large-Scale Appearance of Ultraconserved Elements in Tetrapod Genomes and Slowdown of the Molecular Clock

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2 December 2018

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2 December 2018

Numerous potentially functional but non-genic conserved sequences on human chromosome 21

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2 December 2018

Rewiring of the Yeast Transcriptional Network Through the Evolution of Motif Usage

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Defining a genomic radius for long-range enhancer action: duplicated conserved non-coding elements hold the key

1 reference

https://pubmed.ncbi.nlm.nih.gov/23393190

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Promoter shuffling at a nuclear gene for mitochondrial RPL27. Involvement of interchromosome and subsequent intrachromosome recombinations

1 reference

https://pubmed.ncbi.nlm.nih.gov/23393190

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automated high-throughput mapping of promoter-enhancer interactions in zebrafish embryos

1 reference

https://pubmed.ncbi.nlm.nih.gov/23393190

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKT030

1 reference

Europe PubMed Central

PMC publication ID

13 September 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 September 2017

ResearchGate publication ID

0 references

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