(Q39633038)

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PhyPA: Phylogenetic method with pairwise sequence alignment outperforms likelihood methods in phylogenetics involving highly diverged sequences

scientific article published on July 2016

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

13 September 2017

PhyPA: Phylogenetic method with pairwise sequence alignment outperforms likelihood methods in phylogenetics involving highly diverged sequences (English)

1 reference

Europe PubMed Central

PubMed publication ID

13 September 2017

sequence alignment

1 reference

based on heuristic

inferred from title

1 reference

based on heuristic

inferred from title

object named as

Xuhua Xia

1

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publication date

1 July 2016

1 reference

Europe PubMed Central

PubMed publication ID

13 September 2017

number of pages

13

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based on heuristic

inferred from page(s)

Molecular Phylogenetics and Evolution

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Europe PubMed Central

PubMed publication ID

13 September 2017

102

1 reference

Europe PubMed Central

PubMed publication ID

13 September 2017

331-343

1 reference

Europe PubMed Central

PubMed publication ID

13 September 2017

PHYRN: a robust method for phylogenetic analysis of highly divergent sequences

1 reference

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MergeAlign: improving multiple sequence alignment performance by dynamic reconstruction of consensus multiple sequence alignments

1 reference

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Theoretical foundation of the balanced minimum evolution method of phylogenetic inference and its relationship to weighted least-squares tree fitting

1 reference

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1 reference

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1 reference

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1 reference

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A Hidden Markov Model approach to variation among sites in rate of evolution

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2016.07.001

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INDELible: a flexible simulator of biological sequence evolution

1 reference

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Estimation of the number of amino acid substitutions per site when the substitution rate varies among sites.

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1 reference

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Simultaneous Bayesian estimation of alignment and phylogeny under a joint model of protein sequence and structure

1 reference

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The alignment of sets of sequences and the construction of phyletic trees: an integrated method

1 reference

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Multiple alignment of DNA sequences with MAFFT

1 reference

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1 reference

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Multiple sequence alignment: in pursuit of homologous DNA positions

1 reference

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Uncertainty in homology inferences: assessing and improving genomic sequence alignment

1 reference

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Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

1 reference

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Biological sequence simulation for testing complex evolutionary hypotheses: indel-Seq-Gen version 2.0.

1 reference

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Prospects for inferring very large phylogenies by using the neighbor-joining method

1 reference

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7 January 2021

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2016.07.001

7 January 2021

Phylogenomic analyses elucidate the evolutionary relationships of bats

1 reference

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Alignment uncertainty and genomic analysis

1 reference

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Phylogenetic relationship among horseshoe crab species: effect of substitution models on phylogenetic analyses

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Information-theoretic indices and an approximate significance test for testing the molecular clock hypothesis with genetic distances

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18S ribosomal RNA and tetrapod phylogeny

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An index of substitution saturation and its application

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A distance-based least-square method for dating speciation events

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Maximum-Likelihood Tree Estimation Using Codon Substitution Models with Multiple Partitions

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Identifiers

10.1016/J.YMPEV.2016.07.001

1 reference

Europe PubMed Central

PubMed publication ID

13 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

13 September 2017

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